Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BDI entry

There are 6 chains in PDB entry 9BDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LEU 156
B	VAL 4	LEU 156
C	GLU 1	CYS 234
D	ASP 1	CYS 214
H	GLU 1	CYS 234
L	ASP 1	CYS 214

There are 32 helices in PDB entry 9BDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	20	Right-handed alpha
Helix 2	AA2	A	26	38	Right-handed alpha
Helix 3	AA3	A	97	114	Right-handed alpha
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	125	139	Right-handed alpha
Helix 6	AA6	A	149	151	Right-handed 310
Helix 7	AA7	B	5	20	Right-handed alpha
Helix 8	AA8	B	26	38	Right-handed alpha
Helix 9	AA9	B	97	114	Right-handed alpha
Helix 10	AB1	B	114	124	Right-handed alpha
Helix 11	AB2	B	125	139	Right-handed alpha
Helix 12	AB3	B	149	151	Right-handed 310
Helix 13	AB4	C	28	32	Right-handed 310
Helix 14	AB5	C	53	57	Right-handed 310
Helix 15	AB6	C	89	93	Right-handed 310
Helix 16	AB7	C	145	149	Right-handed 310
Helix 17	AB8	C	174	176	Right-handed 310
Helix 18	AB9	C	205	207	Right-handed 310
Helix 19	AC1	C	219	222	Right-handed 310
Helix 20	AC2	D	79	83	Right-handed 310
Helix 21	AC3	D	121	127	Right-handed alpha
Helix 22	AC4	D	183	189	Right-handed alpha
Helix 23	AC5	H	28	32	Right-handed 310
Helix 24	AC6	H	53	57	Right-handed 310
Helix 25	AC7	H	89	93	Right-handed 310
Helix 26	AC8	H	145	149	Right-handed 310
Helix 27	AC9	H	174	176	Right-handed 310
Helix 28	AD1	H	205	207	Right-handed 310
Helix 29	AD2	H	219	222	Right-handed 310
Helix 30	AD3	L	79	83	Right-handed 310
Helix 31	AD4	L	121	127	Right-handed alpha
Helix 32	AD5	L	183	189	Right-handed alpha

There are 22 sheets in PDB entry 9BDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	85	94	parallel
Strand 4	A	63	75	anti-parallel
Strand 5	A	153	156	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	85	94	parallel
Strand 4	B	63	75	anti-parallel
Strand 5	B	153	156	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	125	129	parallel
Strand 3	C	94	105	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	125	129	parallel
Strand 3	C	94	105	anti-parallel
Strand 4	C	112	121	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	181	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	187	188	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	213	218	anti-parallel
Strand 3	C	223	228	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	94	105	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	94	105	anti-parallel
Strand 4	H	112	121	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	181	183	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	187	188	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	172	first strand
Strand 2	H	213	218	anti-parallel
Strand 3	H	223	228	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDI