Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BDQ entry

There are 5 chains in PDB entry 9BDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5VAL 1463
B
 MET 479PRO 596
D
 TYR 477PRO 579
C
 MET 479ASN 708
E
 MET 479GLY 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 89 helices in PDB entry 9BDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
60 77Right-handed alpha
Helix 5
AA5
A
79 83Right-handed 310
Helix 6
AA6
A
91 96Right-handed alpha
Helix 7
AA7
A
105 137Right-handed alpha
Helix 8
AA8
A
140 156Right-handed alpha
Helix 9
AA9
A
156 163Right-handed alpha
Helix 10
AB1
A
166 189Right-handed alpha
Helix 11
AB2
A
190 193Right-handed 310
Helix 12
AB3
A
231 255Right-handed alpha
Helix 13
AB4
A
256 259Right-handed 310
Helix 14
AB5
A
260 273Right-handed alpha
Helix 15
AB6
A
275 280Right-handed alpha
Helix 16
AB7
A
282 289Right-handed alpha
Helix 17
AB8
A
289 300Right-handed alpha
Helix 18
AB9
A
304 308Right-handed 310
Helix 19
AC1
A
309 326Right-handed alpha
Helix 20
AC2
A
330 346Right-handed alpha
Helix 21
AC3
A
349 355Right-handed alpha
Helix 22
AC4
A
356 359Right-handed 310
Helix 23
AC5
A
369 382Right-handed alpha
Helix 24
AC6
A
389 409Right-handed alpha
Helix 25
AC7
A
425 435Right-handed alpha
Helix 26
AC8
A
439 446Right-handed alpha
Helix 27
AC9
A
447 451Right-handed 310
Helix 28
AD1
A
482 486Right-handed 310
Helix 29
AD2
A
488 492Right-handed 310
Helix 30
AD3
A
504 512Right-handed alpha
Helix 31
AD4
A
516 526Right-handed alpha
Helix 32
AD5
A
527 532Right-handed alpha
Helix 33
AD6
A
557 573Right-handed alpha
Helix 34
AD7
A
574 580Right-handed 310
Helix 35
AD8
A
588 601Right-handed alpha
Helix 36
AD9
A
725 730Right-handed alpha
Helix 37
AE1
A
731 747Right-handed alpha
Helix 38
AE2
A
754 760Right-handed alpha
Helix 39
AE3
A
780 784Right-handed 310
Helix 40
AE4
A
802 822Right-handed alpha
Helix 41
AE5
A
847 873Right-handed alpha
Helix 42
AE6
A
904 910Right-handed alpha
Helix 43
AE7
A
922 940Right-handed alpha
Helix 44
AE8
A
943 964Right-handed alpha
Helix 45
AE9
A
972 982Right-handed alpha
Helix 46
AF1
A
982 992Right-handed alpha
Helix 47
AF2
A
993 997Right-handed 310
Helix 48
AF3
A
1003 1009Right-handed alpha
Helix 49
AF4
A
1014 1029Right-handed alpha
Helix 50
AF5
A
1033 1042Right-handed alpha
Helix 51
AF6
A
1049 1056Right-handed alpha
Helix 52
AF7
A
1067 1083Right-handed alpha
Helix 53
AF8
A
1096 1110Right-handed alpha
Helix 54
AF9
A
1115 1124Right-handed alpha
Helix 55
AG1
A
1126 1137Right-handed alpha
Helix 56
AG2
A
1141 1147Right-handed alpha
Helix 57
AG3
A
1155 1179Right-handed alpha
Helix 58
AG4
A
1191 1204Right-handed alpha
Helix 59
AG5
A
1204 1209Right-handed alpha
Helix 60
AG6
A
1220 1224Right-handed alpha
Helix 61
AG7
A
1236 1241Right-handed alpha
Helix 62
AG8
A
1291 1308Right-handed alpha
Helix 63
AG9
A
1311 1323Right-handed alpha
Helix 64
AH1
A
1329 1337Right-handed alpha
Helix 65
AH2
A
1374 1378Right-handed 310
Helix 66
AH3
A
1391 1407Right-handed alpha
Helix 67
AH4
B
480 484Right-handed alpha
Helix 68
AH5
B
489 502Right-handed alpha
Helix 69
AH6
B
507 533Right-handed alpha
Helix 70
AH7
B
533 543Right-handed alpha
Helix 71
AH8
B
544 578Right-handed alpha
Helix 72
AH9
D
480 485Right-handed alpha
Helix 73
AI1
D
486 488Right-handed 310
Helix 74
AI2
D
489 502Right-handed alpha
Helix 75
AI3
D
511 539Right-handed alpha
Helix 76
AI4
D
542 574Right-handed alpha
Helix 77
AI5
C
489 501Right-handed alpha
Helix 78
AI6
C
507 543Right-handed alpha
Helix 79
AI7
C
545 574Right-handed alpha
Helix 80
AI8
C
604 609Right-handed 310
Helix 81
AI9
C
634 638Right-handed 310
Helix 82
AJ1
C
657 672Right-handed alpha
Helix 83
AJ2
C
674 688Right-handed alpha
Helix 84
AJ3
C
690 707Right-handed alpha
Helix 85
AJ4
E
480 485Right-handed alpha
Helix 86
AJ5
E
489 497Right-handed alpha
Helix 87
AJ6
E
498 501Right-handed 310
Helix 88
AJ7
E
510 541Right-handed alpha
Helix 89
AJ8
E
542 573Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 9BDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
367 368parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
224 230parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
199 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
E
575 578anti-parallel
Strand 3
C
593 599parallel
Strand 4
C
575 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
454 455anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 556first strand
Strand 2
A
537 539anti-parallel
Strand 3
A
763 766parallel
Strand 4
A
790 792anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 716first strand
Strand 2
A
839 842anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 828first strand
Strand 2
A
834 836anti-parallel
Strand 3
A
718 721anti-parallel
Strand 4
A
883 885anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 891first strand
Strand 2
A
894 897anti-parallel
Strand 3
A
900 901anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1114first strand
Strand 2
A
1212 1213parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1231first strand
Strand 2
A
1418 1424anti-parallel
Strand 3
A
1246 1251anti-parallel
Strand 4
A
1371 1373anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1379 1381first strand
Strand 2
A
1384 1386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il