Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BDS entry

There are 6 chains in PDB entry 9BDS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	GLU 159
J	ASN 8	GLU 159
M	ASN 8	GLU 159
P	ASN 8	GLU 159
D	ASN 8	GLU 159
G	ASN 8	GLU 159

There are no helices in PDB entry 9BDS

There are 12 sheets in PDB entry 9BDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	9	14	anti-parallel
Strand 4	A	43	47	anti-parallel
Strand 5	M	138	144	anti-parallel
Strand 6	M	105	111	anti-parallel
Strand 7	M	118	124	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	52	58	anti-parallel
Strand 4	A	129	133	anti-parallel
Strand 5	A	95	100	anti-parallel
Strand 6	A	147	150	anti-parallel
Strand 7	A	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	124	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	D	43	47	anti-parallel
Strand 5	D	9	14	anti-parallel
Strand 6	D	61	64	anti-parallel
Strand 7	D	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	69	71	first strand
Strand 2	J	61	64	anti-parallel
Strand 3	J	9	14	anti-parallel
Strand 4	J	43	47	anti-parallel
Strand 5	P	138	144	anti-parallel
Strand 6	P	105	111	anti-parallel
Strand 7	P	118	124	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	38	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	52	58	anti-parallel
Strand 4	J	129	133	anti-parallel
Strand 5	J	95	100	anti-parallel
Strand 6	J	147	150	anti-parallel
Strand 7	J	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	124	first strand
Strand 2	J	105	111	anti-parallel
Strand 3	J	138	144	anti-parallel
Strand 4	M	43	47	anti-parallel
Strand 5	M	9	14	anti-parallel
Strand 6	M	61	64	anti-parallel
Strand 7	M	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	32	38	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	52	58	anti-parallel
Strand 4	M	129	133	anti-parallel
Strand 5	M	95	100	anti-parallel
Strand 6	M	147	150	anti-parallel
Strand 7	M	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	69	71	first strand
Strand 2	P	61	64	anti-parallel
Strand 3	P	9	14	anti-parallel
Strand 4	P	43	47	anti-parallel
Strand 5	G	138	144	anti-parallel
Strand 6	G	105	111	anti-parallel
Strand 7	G	118	124	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	32	38	first strand
Strand 2	P	19	25	anti-parallel
Strand 3	P	52	58	anti-parallel
Strand 4	P	129	133	anti-parallel
Strand 5	P	95	100	anti-parallel
Strand 6	P	147	150	anti-parallel
Strand 7	P	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	52	58	anti-parallel
Strand 4	D	129	133	anti-parallel
Strand 5	D	95	100	anti-parallel
Strand 6	D	147	150	anti-parallel
Strand 7	D	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	124	first strand
Strand 2	D	105	111	anti-parallel
Strand 3	D	138	144	anti-parallel
Strand 4	G	43	47	anti-parallel
Strand 5	G	9	14	anti-parallel
Strand 6	G	61	64	anti-parallel
Strand 7	G	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	38	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	52	58	anti-parallel
Strand 4	G	129	133	anti-parallel
Strand 5	G	95	100	anti-parallel
Strand 6	G	147	150	anti-parallel
Strand 7	G	155	157	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BDS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDS