Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BF1 entry

There are 2 chains in PDB entry 9BF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1190
B	MET 1	SER 1190

There are 95 helices in PDB entry 9BF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	20	37	Right-handed alpha
Helix 3	AA3	A	54	78	Right-handed alpha
Helix 4	AA4	A	79	81	Right-handed 310
Helix 5	AA5	A	96	112	Right-handed alpha
Helix 6	AA6	A	121	130	Right-handed alpha
Helix 7	AA7	A	137	145	Right-handed alpha
Helix 8	AA8	A	146	157	Right-handed alpha
Helix 9	AA9	A	162	178	Right-handed alpha
Helix 10	AB1	A	181	207	Right-handed alpha
Helix 11	AB2	A	217	227	Right-handed alpha
Helix 12	AB3	A	227	235	Right-handed alpha
Helix 13	AB4	A	244	250	Right-handed alpha
Helix 14	AB5	A	259	263	Right-handed 310
Helix 15	AB6	A	276	286	Right-handed alpha
Helix 16	AB7	A	293	304	Right-handed alpha
Helix 17	AB8	A	322	337	Right-handed alpha
Helix 18	AB9	A	401	435	Right-handed alpha
Helix 19	AC1	A	443	459	Right-handed alpha
Helix 20	AC2	A	461	463	Right-handed 310
Helix 21	AC3	A	464	471	Right-handed alpha
Helix 22	AC4	A	475	479	Right-handed 310
Helix 23	AC5	A	493	497	Right-handed 310
Helix 24	AC6	A	524	536	Right-handed alpha
Helix 25	AC7	A	556	565	Right-handed alpha
Helix 26	AC8	A	572	587	Right-handed alpha
Helix 27	AC9	A	604	616	Right-handed alpha
Helix 28	AD1	A	621	629	Right-handed alpha
Helix 29	AD2	A	635	657	Right-handed alpha
Helix 30	AD3	A	672	691	Right-handed alpha
Helix 31	AD4	A	789	808	Right-handed alpha
Helix 32	AD5	A	811	825	Right-handed alpha
Helix 33	AD6	A	827	837	Right-handed alpha
Helix 34	AD7	A	838	855	Right-handed alpha
Helix 35	AD8	A	874	880	Right-handed alpha
Helix 36	AD9	A	889	901	Right-handed alpha
Helix 37	AE1	A	909	937	Right-handed alpha
Helix 38	AE2	A	943	960	Right-handed alpha
Helix 39	AE3	A	970	972	Right-handed 310
Helix 40	AE4	A	992	996	Right-handed 310
Helix 41	AE5	A	1000	1002	Right-handed 310
Helix 42	AE6	A	1014	1019	Right-handed alpha
Helix 43	AE7	A	1023	1032	Right-handed alpha
Helix 44	AE8	A	1045	1068	Right-handed alpha
Helix 45	AE9	A	1110	1127	Right-handed alpha
Helix 46	AF1	A	1176	1189	Right-handed alpha
Helix 47	AF2	B	4	9	Right-handed 310
Helix 48	AF3	B	20	37	Right-handed alpha
Helix 49	AF4	B	54	78	Right-handed alpha
Helix 50	AF5	B	79	81	Right-handed 310
Helix 51	AF6	B	95	98	Right-handed 310
Helix 52	AF7	B	99	112	Right-handed alpha
Helix 53	AF8	B	121	130	Right-handed alpha
Helix 54	AF9	B	137	145	Right-handed alpha
Helix 55	AG1	B	146	158	Right-handed alpha
Helix 56	AG2	B	162	178	Right-handed alpha
Helix 57	AG3	B	181	207	Right-handed alpha
Helix 58	AG4	B	217	227	Right-handed alpha
Helix 59	AG5	B	227	234	Right-handed alpha
Helix 60	AG6	B	244	250	Right-handed alpha
Helix 61	AG7	B	273	286	Right-handed alpha
Helix 62	AG8	B	293	304	Right-handed alpha
Helix 63	AG9	B	312	316	Right-handed 310
Helix 64	AH1	B	322	337	Right-handed alpha
Helix 65	AH2	B	401	435	Right-handed alpha
Helix 66	AH3	B	436	438	Right-handed 310
Helix 67	AH4	B	443	460	Right-handed alpha
Helix 68	AH5	B	461	463	Right-handed 310
Helix 69	AH6	B	464	471	Right-handed alpha
Helix 70	AH7	B	493	497	Right-handed 310
Helix 71	AH8	B	524	536	Right-handed alpha
Helix 72	AH9	B	558	565	Right-handed alpha
Helix 73	AI1	B	566	568	Right-handed 310
Helix 74	AI2	B	572	587	Right-handed alpha
Helix 75	AI3	B	604	616	Right-handed alpha
Helix 76	AI4	B	621	629	Right-handed alpha
Helix 77	AI5	B	633	657	Right-handed alpha
Helix 78	AI6	B	675	691	Right-handed alpha
Helix 79	AI7	B	789	808	Right-handed alpha
Helix 80	AI8	B	811	824	Right-handed alpha
Helix 81	AI9	B	827	836	Right-handed alpha
Helix 82	AJ1	B	838	856	Right-handed alpha
Helix 83	AJ2	B	873	879	Right-handed alpha
Helix 84	AJ3	B	889	902	Right-handed alpha
Helix 85	AJ4	B	909	938	Right-handed alpha
Helix 86	AJ5	B	943	960	Right-handed alpha
Helix 87	AJ6	B	970	972	Right-handed 310
Helix 88	AJ7	B	1000	1002	Right-handed 310
Helix 89	AJ8	B	1009	1014	Right-handed alpha
Helix 90	AJ9	B	1014	1019	Right-handed alpha
Helix 91	AK1	B	1023	1032	Right-handed alpha
Helix 92	AK2	B	1045	1068	Right-handed alpha
Helix 93	AK3	B	1077	1081	Right-handed 310
Helix 94	AK4	B	1110	1127	Right-handed alpha
Helix 95	AK5	B	1176	1190	Right-handed alpha

There are 20 sheets in PDB entry 9BF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	537	542	parallel
Strand 3	A	267	272	parallel
Strand 4	A	87	92	parallel
Strand 5	A	239	243	parallel
Strand 6	A	132	134	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	514	521	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	354	358	anti-parallel
Strand 5	A	364	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	382	386	parallel
Strand 3	A	373	377	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	601	first strand
Strand 2	A	865	871	parallel
Strand 3	A	773	776	parallel
Strand 4	A	663	666	parallel
Strand 5	A	728	731	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	975	first strand
Strand 2	A	1043	1044	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	997	998	first strand
Strand 2	A	983	986	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1074	first strand
Strand 2	A	1087	1089	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1097	1099	first strand
Strand 2	A	1130	1134	parallel
Strand 3	A	1161	1164	parallel
Strand 4	A	1145	1147	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	537	542	parallel
Strand 3	B	267	272	parallel
Strand 4	B	87	92	parallel
Strand 5	B	239	243	parallel
Strand 6	B	132	135	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	257	258	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	514	521	anti-parallel
Strand 3	B	499	506	anti-parallel
Strand 4	B	354	358	anti-parallel
Strand 5	B	364	366	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	382	386	parallel
Strand 3	B	373	377	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	601	first strand
Strand 2	B	865	871	parallel
Strand 3	B	773	776	parallel
Strand 4	B	663	667	parallel
Strand 5	B	728	732	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	975	first strand
Strand 2	B	1043	1044	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	997	998	first strand
Strand 2	B	983	986	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1072	1074	first strand
Strand 2	B	1086	1089	anti-parallel
Strand 3	B	1097	1102	anti-parallel
Strand 4	B	1130	1135	parallel
Strand 5	B	1161	1164	parallel
Strand 6	B	1145	1147	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1137	1138	first strand
Strand 2	B	1168	1169	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF1