Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BF3 entry

There are 2 chains in PDB entry 9BF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1000LYS 1507
B
 ASP 1000LYS 1507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 9BF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1000 1012Right-handed alpha
Helix 2
AA2
A
1015 1027Right-handed alpha
Helix 3
AA3
A
1031 1038Right-handed alpha
Helix 4
AA4
A
1046 1067Right-handed alpha
Helix 5
AA5
A
1082 1086Right-handed 310
Helix 6
AA6
A
1108 1116Right-handed alpha
Helix 7
AA7
A
1161 1179Right-handed alpha
Helix 8
AA8
A
1195 1205Right-handed alpha
Helix 9
AA9
A
1211 1220Right-handed alpha
Helix 10
AB1
A
1227 1239Right-handed alpha
Helix 11
AB2
A
1242 1251Right-handed alpha
Helix 12
AB3
A
1257 1269Right-handed alpha
Helix 13
AB4
A
1274 1291Right-handed alpha
Helix 14
AB5
A
1291 1296Right-handed alpha
Helix 15
AB6
A
1339 1351Right-handed alpha
Helix 16
AB7
A
1367 1383Right-handed alpha
Helix 17
AB8
A
1413 1431Right-handed alpha
Helix 18
AB9
A
1443 1455Right-handed alpha
Helix 19
AC1
A
1493 1507Right-handed alpha
Helix 20
AC2
B
1001 1012Right-handed alpha
Helix 21
AC3
B
1015 1027Right-handed alpha
Helix 22
AC4
B
1031 1038Right-handed alpha
Helix 23
AC5
B
1046 1067Right-handed alpha
Helix 24
AC6
B
1082 1086Right-handed 310
Helix 25
AC7
B
1108 1116Right-handed alpha
Helix 26
AC8
B
1161 1179Right-handed alpha
Helix 27
AC9
B
1195 1205Right-handed alpha
Helix 28
AD1
B
1211 1220Right-handed alpha
Helix 29
AD2
B
1227 1239Right-handed alpha
Helix 30
AD3
B
1242 1251Right-handed alpha
Helix 31
AD4
B
1257 1269Right-handed alpha
Helix 32
AD5
B
1274 1291Right-handed alpha
Helix 33
AD6
B
1291 1296Right-handed alpha
Helix 34
AD7
B
1339 1351Right-handed alpha
Helix 35
AD8
B
1367 1383Right-handed alpha
Helix 36
AD9
B
1413 1431Right-handed alpha
Helix 37
AE1
B
1443 1455Right-handed alpha
Helix 38
AE2
B
1493 1507Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9BF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1071first strand
Strand 2
A
1124 1133parallel
Strand 3
A
1145 1156anti-parallel
Strand 4
A
1359 1366anti-parallel
Strand 5
A
1330 1338anti-parallel
Strand 6
A
1318 1325anti-parallel
Strand 7
A
1188 1194anti-parallel
Strand 8
A
1300 1303parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1078 1080first strand
Strand 2
A
1100 1103anti-parallel
Strand 3
A
1092 1095anti-parallel
Strand 4
B
1092 1095anti-parallel
Strand 5
B
1100 1103anti-parallel
Strand 6
B
1078 1080anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1435 1437first strand
Strand 2
A
1407 1411parallel
Strand 3
A
1458 1462parallel
Strand 4
A
1479 1483anti-parallel
Strand 5
A
1488 1492anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1071first strand
Strand 2
B
1124 1133parallel
Strand 3
B
1145 1156anti-parallel
Strand 4
B
1359 1366anti-parallel
Strand 5
B
1330 1338anti-parallel
Strand 6
B
1318 1325anti-parallel
Strand 7
B
1188 1194anti-parallel
Strand 8
B
1300 1303parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1435 1437first strand
Strand 2
B
1407 1411parallel
Strand 3
B
1458 1462parallel
Strand 4
B
1479 1483anti-parallel
Strand 5
B
1488 1492anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il