Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BF6 entry

There are 12 chains in PDB entry 9BF6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 520	LEU 661
C	GLU 32	VAL 505
D	GLN 1	SER 111
E	THR 8	LEU 107
B	LEU 520	LEU 661
F	GLU 32	VAL 505
G	GLN 1	SER 111
H	THR 8	LEU 107
I	LEU 520	LEU 661
J	GLU 32	VAL 505
K	GLN 1	SER 111
L	THR 8	LEU 107

There are 25 helices in PDB entry 9BF6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	535	543	Right-handed alpha
Helix 2	AA2	A	570	596	Right-handed alpha
Helix 3	AA3	A	627	637	Right-handed alpha
Helix 4	AA4	A	639	661	Right-handed alpha
Helix 5	AA5	C	99	115	Right-handed alpha
Helix 6	AA6	C	336	353	Right-handed alpha
Helix 7	AA7	C	368	373	Right-handed alpha
Helix 8	AA8	E	79	83	Right-handed 310
Helix 9	AA9	B	535	543	Right-handed alpha
Helix 10	AB1	B	570	596	Right-handed alpha
Helix 11	AB2	B	627	637	Right-handed alpha
Helix 12	AB3	B	639	661	Right-handed alpha
Helix 13	AB4	F	99	115	Right-handed alpha
Helix 14	AB5	F	336	353	Right-handed alpha
Helix 15	AB6	F	368	373	Right-handed alpha
Helix 16	AB7	H	79	83	Right-handed 310
Helix 17	AB8	I	533	535	Right-handed 310
Helix 18	AB9	I	536	543	Right-handed alpha
Helix 19	AC1	I	570	596	Right-handed alpha
Helix 20	AC2	I	627	661	Right-handed alpha
Helix 21	AC3	J	99	115	Right-handed alpha
Helix 22	AC4	J	336	353	Right-handed alpha
Helix 23	AC5	J	368	373	Right-handed alpha
Helix 24	AC6	K	83	87	Right-handed 310
Helix 25	AC7	L	79	83	Right-handed 310

There are 42 sheets in PDB entry 9BF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	605	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	C	494	497	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	242	245	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	487	490	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	173	174	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	285	287	anti-parallel
Strand 3	C	451	453	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	383	385	anti-parallel
Strand 3	C	413	420	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	294	297	anti-parallel
Strand 6	C	445	447	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	306	first strand
Strand 2	C	318	322	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	467	469	parallel
Strand 3	C	455	456	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	67	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	89	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	42	48	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	22	first strand
Strand 2	E	72	76	anti-parallel
Strand 3	E	63	64	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	40	first strand
Strand 2	F	494	497	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	487	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	84	85	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	238	239	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	190	193	anti-parallel
Strand 3	F	181	183	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	173	174	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	203	first strand
Strand 2	F	433	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	272	first strand
Strand 2	F	285	287	anti-parallel
Strand 3	F	451	453	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	375	first strand
Strand 2	F	383	385	anti-parallel
Strand 3	F	415	420	anti-parallel
Strand 4	F	330	332	anti-parallel
Strand 5	F	294	297	anti-parallel
Strand 6	F	445	447	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	306	first strand
Strand 2	F	318	322	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	361	first strand
Strand 2	F	467	469	parallel
Strand 3	F	455	456	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	105	109	parallel
Strand 3	G	88	95	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	46	51	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	22	first strand
Strand 2	G	77	82	anti-parallel
Strand 3	G	67	72	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	89	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	42	48	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	72	75	anti-parallel
Strand 3	H	63	64	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	40	first strand
Strand 2	J	494	497	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	46	first strand
Strand 2	J	487	491	anti-parallel
Strand 3	J	223	228	anti-parallel
Strand 4	J	242	244	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	92	first strand
Strand 2	J	238	239	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	130	first strand
Strand 2	J	190	193	anti-parallel
Strand 3	J	181	183	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	158	first strand
Strand 2	J	173	174	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	201	203	first strand
Strand 2	J	433	435	parallel
Strand 3	J	423	424	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	272	first strand
Strand 2	J	285	287	anti-parallel
Strand 3	J	451	453	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	374	375	first strand
Strand 2	J	383	385	anti-parallel
Strand 3	J	413	420	anti-parallel
Strand 4	J	330	334	anti-parallel
Strand 5	J	294	297	anti-parallel
Strand 6	J	446	447	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	302	306	first strand
Strand 2	J	318	322	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	360	361	first strand
Strand 2	J	467	469	parallel
Strand 3	J	455	456	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	105	109	parallel
Strand 3	K	88	95	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	22	first strand
Strand 2	K	77	82	anti-parallel
Strand 3	K	67	72	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	42	48	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	72	75	anti-parallel
Strand 3	L	63	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BF6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF6