Analysis of interatomic Contacts of Structural Units in PDB entry:
9BF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BF8 entry

There is 1 chain in PDB entry 9BF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LYS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9BF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
61 73Right-handed alpha
Helix 4
AA4
A
78 91Right-handed alpha
Helix 5
AA5
A
110 121Right-handed alpha
Helix 6
AA6
A
129 142Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
201 205Right-handed alpha
Helix 10
AB1
A
212 219Right-handed alpha
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There are 5 sheets in PDB entry 9BF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
54 57parallel
Strand 4
A
34 36anti-parallel
Strand 5
A
39 40anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
101 102anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 200first strand
Strand 2
A
182 189anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
220 223anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 200first strand
Strand 2
A
182 189anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
309 311anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
241 253parallel
Strand 3
A
296 306anti-parallel
Strand 4
A
260 266anti-parallel
Strand 5
A
271 278anti-parallel
Strand 6
A
282 286anti-parallel
Strand 7
A
289 293anti-parallel
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