Analysis of interatomic Contacts of Structural Units in PDB entry:
9BFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BFP entry

There is 1 chain in PDB entry 9BFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 206THR 1287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9BFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 227Right-handed alpha
Helix 2
AA2
A
248 257Right-handed alpha
Helix 3
AA3
A
261 266Right-handed alpha
Helix 4
AA4
A
269 274Right-handed alpha
Helix 5
AA5
A
283 312Right-handed alpha
Helix 6
AA6
A
416 420Right-handed 310
Helix 7
AA7
A
1066 1070Right-handed 310
Helix 8
AA8
A
1172 1176Right-handed 310
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There are 22 sheets in PDB entry 9BFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
329 332anti-parallel
Strand 3
A
392 395anti-parallel
Strand 4
A
385 387anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
421 422anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
429 430anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 450first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
494 497anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 488first strand
Strand 2
A
470 477anti-parallel
Strand 3
A
505 513anti-parallel
Strand 4
A
522 527anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 568first strand
Strand 2
A
551 556anti-parallel
Strand 3
A
543 547anti-parallel
Strand 4
A
810 813anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
587 589anti-parallel
Strand 3
A
594 600anti-parallel
Strand 4
A
603 610anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 631first strand
Strand 2
A
636 642anti-parallel
Strand 3
A
651 652anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 631first strand
Strand 2
A
636 642anti-parallel
Strand 3
A
654 657anti-parallel
Strand 4
A
664 665anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 680first strand
Strand 2
A
685 689anti-parallel
Strand 3
A
693 698anti-parallel
Strand 4
A
705 709anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 719first strand
Strand 2
A
724 729anti-parallel
Strand 3
A
734 739anti-parallel
Strand 4
A
747 748anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 772first strand
Strand 2
A
775 779anti-parallel
Strand 3
A
783 787anti-parallel
Strand 4
A
798 801anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 835first strand
Strand 2
A
840 843anti-parallel
Strand 3
A
885 888anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 881first strand
Strand 2
A
862 869anti-parallel
Strand 3
A
896 904anti-parallel
Strand 4
A
917 920anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 954first strand
Strand 2
A
937 941anti-parallel
Strand 3
A
929 933anti-parallel
Strand 4
A
1178 1183anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
963 964first strand
Strand 2
A
969 973anti-parallel
Strand 3
A
979 983anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1006first strand
Strand 2
A
1011 1016anti-parallel
Strand 3
A
1021 1025anti-parallel
Strand 4
A
1032 1035anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1045first strand
Strand 2
A
1052 1055anti-parallel
Strand 3
A
1059 1063anti-parallel
Strand 4
A
1072 1075anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1081 1089first strand
Strand 2
A
1094 1101anti-parallel
Strand 3
A
1104 1111anti-parallel
Strand 4
A
1120 1126anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1137 1139first strand
Strand 2
A
1144 1148anti-parallel
Strand 3
A
1154 1159anti-parallel
Strand 4
A
1166 1170anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1207 1209first strand
Strand 2
A
1216 1219anti-parallel
Strand 3
A
1252 1255anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1243 1248first strand
Strand 2
A
1232 1238anti-parallel
Strand 3
A
1264 1272anti-parallel
Strand 4
A
1281 1286anti-parallel
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