Analysis of interatomic Contacts of Structural Units in PDB entry:
9BFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BFQ entry

There are 2 chains in PDB entry 9BFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 208	THR 1287
B	PRO 109	CYS 501

There are 22 helices in PDB entry 9BFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	208	227	Right-handed alpha
Helix 2	AA2	A	248	258	Right-handed alpha
Helix 3	AA3	A	260	266	Right-handed alpha
Helix 4	AA4	A	269	274	Right-handed alpha
Helix 5	AA5	A	283	305	Right-handed alpha
Helix 6	AA6	A	305	312	Right-handed alpha
Helix 7	AA7	A	1066	1070	Right-handed 310
Helix 8	AA8	A	1172	1176	Right-handed 310
Helix 9	AA9	B	110	115	Right-handed alpha
Helix 10	AB1	B	131	134	Right-handed 310
Helix 11	AB2	B	151	166	Right-handed alpha
Helix 12	AB3	B	186	201	Right-handed alpha
Helix 13	AB4	B	211	218	Right-handed alpha
Helix 14	AB5	B	218	226	Right-handed alpha
Helix 15	AB6	B	234	238	Right-handed 310
Helix 16	AB7	B	239	249	Right-handed alpha
Helix 17	AB8	B	265	278	Right-handed alpha
Helix 18	AB9	B	319	326	Right-handed alpha
Helix 19	AC1	B	363	388	Right-handed alpha
Helix 20	AC2	B	410	414	Right-handed 310
Helix 21	AC3	B	423	431	Right-handed alpha
Helix 22	AC4	B	494	499	Right-handed alpha

There are 23 sheets in PDB entry 9BFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	329	332	anti-parallel
Strand 3	A	392	395	anti-parallel
Strand 4	A	385	386	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	404	412	anti-parallel
Strand 4	A	420	422	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	404	412	anti-parallel
Strand 4	A	429	430	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	448	first strand
Strand 2	A	454	459	anti-parallel
Strand 3	A	494	497	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	489	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	505	513	anti-parallel
Strand 4	A	522	527	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	568	first strand
Strand 2	A	551	556	anti-parallel
Strand 3	A	543	547	anti-parallel
Strand 4	A	810	811	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	578	first strand
Strand 2	A	584	587	anti-parallel
Strand 3	A	594	598	anti-parallel
Strand 4	A	609	611	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	631	first strand
Strand 2	A	636	642	anti-parallel
Strand 3	A	651	656	anti-parallel
Strand 4	A	664	670	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	680	first strand
Strand 2	A	685	689	anti-parallel
Strand 3	A	693	698	anti-parallel
Strand 4	A	705	709	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	724	729	anti-parallel
Strand 3	A	734	738	anti-parallel
Strand 4	A	745	748	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	779	first strand
Strand 2	A	783	787	anti-parallel
Strand 3	A	798	801	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	832	835	first strand
Strand 2	A	839	843	anti-parallel
Strand 3	A	885	889	anti-parallel
Strand 4	B	488	490	parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	917	920	first strand
Strand 2	A	896	904	anti-parallel
Strand 3	A	862	869	anti-parallel
Strand 4	A	874	881	anti-parallel
Strand 5	B	476	481	parallel
Strand 6	B	463	470	anti-parallel
Strand 7	B	441	447	anti-parallel
Strand 8	B	330	335	anti-parallel
Strand 9	B	309	313	parallel
Strand 10	B	291	296	parallel
Strand 11	B	258	263	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	949	954	first strand
Strand 2	A	937	941	anti-parallel
Strand 3	A	929	933	anti-parallel
Strand 4	A	1178	1183	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	963	964	first strand
Strand 2	A	969	973	anti-parallel
Strand 3	A	979	983	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1000	1006	first strand
Strand 2	A	1011	1016	anti-parallel
Strand 3	A	1021	1025	anti-parallel
Strand 4	A	1032	1035	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1042	1045	first strand
Strand 2	A	1052	1055	anti-parallel
Strand 3	A	1059	1063	anti-parallel
Strand 4	A	1074	1075	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1089	first strand
Strand 2	A	1094	1101	anti-parallel
Strand 3	A	1105	1111	anti-parallel
Strand 4	A	1120	1125	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1137	1139	first strand
Strand 2	A	1144	1148	anti-parallel
Strand 3	A	1154	1159	anti-parallel
Strand 4	A	1166	1170	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1208	first strand
Strand 2	A	1216	1219	anti-parallel
Strand 3	A	1252	1255	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1248	first strand
Strand 2	A	1232	1239	anti-parallel
Strand 3	A	1264	1272	anti-parallel
Strand 4	A	1281	1286	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	174	180	anti-parallel
Strand 3	B	143	149	parallel
Strand 4	B	205	210	parallel
Strand 5	B	229	231	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	361	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BFQ