Analysis of interatomic Contacts of Structural Units in PDB entry:
9BFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BFR entry

There are 2 chains in PDB entry 9BFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 108THR 529
B
 VAL 108THR 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 9BFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 115Right-handed alpha
Helix 2
AA2
A
131 135Right-handed 310
Helix 3
AA3
A
152 166Right-handed alpha
Helix 4
AA4
A
186 199Right-handed alpha
Helix 5
AA5
A
211 218Right-handed alpha
Helix 6
AA6
A
218 226Right-handed alpha
Helix 7
AA7
A
235 249Right-handed alpha
Helix 8
AA8
A
266 279Right-handed alpha
Helix 9
AA9
A
363 369Right-handed alpha
Helix 10
AB1
A
370 385Right-handed alpha
Helix 11
AB2
A
399 403Right-handed 310
Helix 12
AB3
A
409 414Right-handed 310
Helix 13
AB4
A
423 431Right-handed alpha
Helix 14
AB5
A
433 438Right-handed 310
Helix 15
AB6
A
495 499Right-handed alpha
Helix 16
AB7
B
109 115Right-handed alpha
Helix 17
AB8
B
131 135Right-handed alpha
Helix 18
AB9
B
151 166Right-handed alpha
Helix 19
AC1
B
186 199Right-handed alpha
Helix 20
AC2
B
211 218Right-handed alpha
Helix 21
AC3
B
218 226Right-handed alpha
Helix 22
AC4
B
235 249Right-handed alpha
Helix 23
AC5
B
266 279Right-handed alpha
Helix 24
AC6
B
363 385Right-handed alpha
Helix 25
AC7
B
399 403Right-handed 310
Helix 26
AC8
B
409 414Right-handed 310
Helix 27
AC9
B
423 431Right-handed alpha
Helix 28
AD1
B
433 439Right-handed 310
Helix 29
AD2
B
495 499Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9BFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
146 149parallel
Strand 4
A
208 210parallel
Strand 5
A
229 231parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
493 494anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
462 470anti-parallel
Strand 3
A
441 448anti-parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
309 313parallel
Strand 6
A
291 296parallel
Strand 7
A
258 263parallel
Strand 8
B
522 528anti-parallel
Strand 9
A
522 528anti-parallel
Strand 10
B
258 263anti-parallel
Strand 11
B
291 296parallel
Strand 12
B
309 313parallel
Strand 13
B
330 335parallel
Strand 14
B
441 448anti-parallel
Strand 15
B
462 470anti-parallel
Strand 16
B
476 478anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
361 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
176 180anti-parallel
Strand 3
B
146 149parallel
Strand 4
B
208 210parallel
Strand 5
B
229 231parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
493 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
361 362anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il