Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BGE entry

There are 9 chains in PDB entry 9BGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 33	LEU 662
C	ASN 33	LEU 662
D	VAL 2	SER 112
E	VAL 3	LYS 107
F	VAL 2	SER 112
G	VAL 3	LYS 107
H	VAL 2	SER 112
L	VAL 3	LYS 107
A	ASN 33	LEU 662

There are 51 helices in PDB entry 9BGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	99	117	Right-handed alpha
Helix 2	AA2	B	122	126	Right-handed 310
Helix 3	AA3	B	195	198	Right-handed 310
Helix 4	AA4	B	335	353	Right-handed alpha
Helix 5	AA5	B	367	372	Right-handed alpha
Helix 6	AA6	B	428	431	Right-handed 310
Helix 7	AA7	B	473	483	Right-handed alpha
Helix 8	AA8	B	522	527	Right-handed 310
Helix 9	AA9	B	528	533	Right-handed alpha
Helix 10	AB1	B	535	543	Right-handed alpha
Helix 11	AB2	B	570	595	Right-handed alpha
Helix 12	AB3	B	610	614	Right-handed 310
Helix 13	AB4	B	617	624	Right-handed alpha
Helix 14	AB5	B	626	635	Right-handed alpha
Helix 15	AB6	B	637	660	Right-handed alpha
Helix 16	AB7	C	99	117	Right-handed alpha
Helix 17	AB8	C	122	126	Right-handed 310
Helix 18	AB9	C	195	198	Right-handed 310
Helix 19	AC1	C	335	353	Right-handed alpha
Helix 20	AC2	C	367	372	Right-handed alpha
Helix 21	AC3	C	428	431	Right-handed 310
Helix 22	AC4	C	473	483	Right-handed alpha
Helix 23	AC5	C	522	527	Right-handed 310
Helix 24	AC6	C	528	533	Right-handed alpha
Helix 25	AC7	C	535	543	Right-handed alpha
Helix 26	AC8	C	570	595	Right-handed alpha
Helix 27	AC9	C	610	614	Right-handed 310
Helix 28	AD1	C	617	624	Right-handed alpha
Helix 29	AD2	C	626	635	Right-handed alpha
Helix 30	AD3	C	637	660	Right-handed alpha
Helix 31	AD4	D	83	87	Right-handed 310
Helix 32	AD5	E	79	83	Right-handed 310
Helix 33	AD6	F	83	87	Right-handed 310
Helix 34	AD7	G	79	83	Right-handed 310
Helix 35	AD8	H	83	87	Right-handed 310
Helix 36	AD9	L	79	83	Right-handed 310
Helix 37	AE1	A	99	117	Right-handed alpha
Helix 38	AE2	A	122	126	Right-handed 310
Helix 39	AE3	A	195	198	Right-handed 310
Helix 40	AE4	A	334	353	Right-handed alpha
Helix 41	AE5	A	367	372	Right-handed alpha
Helix 42	AE6	A	428	431	Right-handed 310
Helix 43	AE7	A	473	483	Right-handed alpha
Helix 44	AE8	A	522	527	Right-handed 310
Helix 45	AE9	A	528	533	Right-handed alpha
Helix 46	AF1	A	535	543	Right-handed alpha
Helix 47	AF2	A	570	595	Right-handed alpha
Helix 48	AF3	A	610	614	Right-handed 310
Helix 49	AF4	A	617	624	Right-handed alpha
Helix 50	AF5	A	626	635	Right-handed alpha
Helix 51	AF6	A	637	660	Right-handed alpha

There are 45 sheets in PDB entry 9BGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	498	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	604	608	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	487	490	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	84	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	53	56	parallel
Strand 3	B	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	175	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	179	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	433	434	parallel
Strand 3	B	422	423	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	261	first strand
Strand 2	B	442	455	anti-parallel
Strand 3	B	284	298	anti-parallel
Strand 4	B	330	334	anti-parallel
Strand 5	B	412	413	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	284	298	anti-parallel
Strand 3	B	442	455	anti-parallel
Strand 4	B	467	469	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	310	first strand
Strand 2	B	315	322	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	377	first strand
Strand 2	B	380	384	anti-parallel
Strand 3	B	417	419	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	498	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	604	608	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	487	490	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	175	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	179	181	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	433	434	parallel
Strand 3	C	422	423	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	442	455	anti-parallel
Strand 3	C	284	298	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	412	413	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	442	455	anti-parallel
Strand 4	C	467	469	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	310	first strand
Strand 2	C	315	322	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	377	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	417	419	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	63	67	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	88	anti-parallel
Strand 4	E	35	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	51	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	63	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	88	anti-parallel
Strand 4	G	35	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	88	anti-parallel
Strand 4	L	35	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	498	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	604	608	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	490	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	175	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	179	181	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	433	434	parallel
Strand 3	A	422	423	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	442	455	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	330	332	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	442	455	anti-parallel
Strand 4	A	467	469	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	315	322	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	417	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGE