Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BGG entry

There are 2 chains in PDB entry 9BGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6ARG 463
B
 TYR 6ARG 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9BGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
133 137Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
147 154Right-handed alpha
Helix 8
AA8
A
155 158Right-handed 310
Helix 9
AA9
A
179 182Right-handed 310
Helix 10
AB1
A
198 202Right-handed alpha
Helix 11
AB2
A
206 223Right-handed alpha
Helix 12
AB3
A
240 250Right-handed alpha
Helix 13
AB4
A
250 260Right-handed alpha
Helix 14
AB5
A
269 280Right-handed alpha
Helix 15
AB6
A
286 295Right-handed alpha
Helix 16
AB7
A
303 315Right-handed alpha
Helix 17
AB8
A
320 338Right-handed alpha
Helix 18
AB9
A
364 369Right-handed alpha
Helix 19
AC1
A
371 382Right-handed alpha
Helix 20
AC2
A
406 420Right-handed alpha
Helix 21
AC3
A
437 453Right-handed alpha
Helix 22
AC4
B
7 15Right-handed alpha
Helix 23
AC5
B
22 27Right-handed alpha
Helix 24
AC6
B
42 56Right-handed alpha
Helix 25
AC7
B
90 103Right-handed alpha
Helix 26
AC8
B
132 136Right-handed 310
Helix 27
AC9
B
139 143Right-handed 310
Helix 28
AD1
B
147 153Right-handed alpha
Helix 29
AD2
B
154 158Right-handed 310
Helix 30
AD3
B
179 182Right-handed 310
Helix 31
AD4
B
208 224Right-handed alpha
Helix 32
AD5
B
240 250Right-handed alpha
Helix 33
AD6
B
250 260Right-handed alpha
Helix 34
AD7
B
269 281Right-handed alpha
Helix 35
AD8
B
286 295Right-handed alpha
Helix 36
AD9
B
303 315Right-handed alpha
Helix 37
AE1
B
320 337Right-handed alpha
Helix 38
AE2
B
364 370Right-handed alpha
Helix 39
AE3
B
371 382Right-handed alpha
Helix 40
AE4
B
406 420Right-handed alpha
Helix 41
AE5
B
437 453Right-handed alpha
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There are 9 sheets in PDB entry 9BGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
109 113parallel
Strand 3
A
33 37parallel
Strand 4
A
164 167parallel
Strand 5
A
236 239anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
424 426anti-parallel
Strand 3
A
398 400parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
229 231anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
390 393parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
385 386anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
109 112parallel
Strand 3
B
33 37parallel
Strand 4
B
164 168parallel
Strand 5
B
236 239anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
424 428anti-parallel
Strand 3
B
398 402parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
229 231anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
390 393parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il