Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BGJ entry

There are 4 chains in PDB entry 9BGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLY 339
C
 G 2 G 26
B
 PRO 2GLY 339
D
 C 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9BGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 13Right-handed alpha
Helix 2
AA2
A
14 18Right-handed 310
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
56 61Right-handed alpha
Helix 5
AA5
A
63 68Right-handed alpha
Helix 6
AA6
A
69 83Right-handed alpha
Helix 7
AA7
A
90 123Right-handed alpha
Helix 8
AA8
A
140 143Right-handed 310
Helix 9
AA9
A
161 177Right-handed alpha
Helix 10
AB1
A
195 199Right-handed 310
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
212 221Right-handed alpha
Helix 13
AB4
A
222 227Right-handed 310
Helix 14
AB5
A
231 235Right-handed 310
Helix 15
AB6
A
250 263Right-handed alpha
Helix 16
AB7
A
286 291Right-handed alpha
Helix 17
AB8
A
318 335Right-handed alpha
Helix 18
AB9
B
6 13Right-handed alpha
Helix 19
AC1
B
14 18Right-handed 310
Helix 20
AC2
B
38 47Right-handed alpha
Helix 21
AC3
B
56 61Right-handed alpha
Helix 22
AC4
B
63 68Right-handed alpha
Helix 23
AC5
B
69 83Right-handed alpha
Helix 24
AC6
B
90 123Right-handed alpha
Helix 25
AC7
B
140 143Right-handed 310
Helix 26
AC8
B
161 177Right-handed alpha
Helix 27
AC9
B
195 199Right-handed 310
Helix 28
AD1
B
212 221Right-handed alpha
Helix 29
AD2
B
221 226Right-handed alpha
Helix 30
AD3
B
231 233Right-handed 310
Helix 31
AD4
B
250 265Right-handed alpha
Helix 32
AD5
B
286 291Right-handed alpha
Helix 33
AD6
B
318 335Right-handed alpha
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There are 4 sheets in PDB entry 9BGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
35 37anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
189 193anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
275 278parallel
Strand 5
A
313 314parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
35 37anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
235 241anti-parallel
Strand 4
B
275 278parallel
Strand 5
B
313 314parallel
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