Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BGK entry

There are 7 chains in PDB entry 9BGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	C 12
B	A 1	C 25
C	G 1	G 26
D	T 1	T 12
E	MET 1	SER 687
F	MET 1	SER 1190
G	MET 1	SER 1190

There are119 helices in PDB entry 9BGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	24	30	Right-handed alpha
Helix 2	AA2	E	46	61	Right-handed alpha
Helix 3	AA3	E	105	120	Right-handed alpha
Helix 4	AA4	E	184	187	Right-handed 310
Helix 5	AA5	E	194	199	Right-handed alpha
Helix 6	AA6	E	239	242	Right-handed 310
Helix 7	AA7	E	245	249	Right-handed 310
Helix 8	AA8	E	252	261	Right-handed alpha
Helix 9	AA9	E	261	266	Right-handed alpha
Helix 10	AB1	E	286	302	Right-handed alpha
Helix 11	AB2	E	317	328	Right-handed alpha
Helix 12	AB3	E	361	369	Right-handed alpha
Helix 13	AB4	E	379	384	Right-handed 310
Helix 14	AB5	E	391	411	Right-handed alpha
Helix 15	AB6	E	462	474	Right-handed alpha
Helix 16	AB7	E	477	482	Right-handed alpha
Helix 17	AB8	E	512	526	Right-handed alpha
Helix 18	AB9	E	531	542	Right-handed alpha
Helix 19	AC1	E	547	558	Right-handed alpha
Helix 20	AC2	E	565	570	Right-handed 310
Helix 21	AC3	E	576	590	Right-handed alpha
Helix 22	AC4	E	651	657	Right-handed 310
Helix 23	AC5	E	671	676	Right-handed alpha
Helix 24	AC6	E	677	679	Right-handed 310
Helix 25	AC7	F	4	9	Right-handed 310
Helix 26	AC8	F	20	37	Right-handed alpha
Helix 27	AC9	F	55	77	Right-handed alpha
Helix 28	AD1	F	94	111	Right-handed alpha
Helix 29	AD2	F	121	130	Right-handed alpha
Helix 30	AD3	F	137	143	Right-handed alpha
Helix 31	AD4	F	146	157	Right-handed alpha
Helix 32	AD5	F	162	178	Right-handed alpha
Helix 33	AD6	F	183	207	Right-handed alpha
Helix 34	AD7	F	217	227	Right-handed alpha
Helix 35	AD8	F	229	234	Right-handed alpha
Helix 36	AD9	F	244	250	Right-handed alpha
Helix 37	AE1	F	259	263	Right-handed 310
Helix 38	AE2	F	276	286	Right-handed alpha
Helix 39	AE3	F	293	303	Right-handed alpha
Helix 40	AE4	F	322	337	Right-handed alpha
Helix 41	AE5	F	401	434	Right-handed alpha
Helix 42	AE6	F	448	459	Right-handed alpha
Helix 43	AE7	F	464	471	Right-handed alpha
Helix 44	AE8	F	493	497	Right-handed 310
Helix 45	AE9	F	524	536	Right-handed alpha
Helix 46	AF1	F	559	564	Right-handed alpha
Helix 47	AF2	F	572	587	Right-handed alpha
Helix 48	AF3	F	604	616	Right-handed alpha
Helix 49	AF4	F	621	629	Right-handed alpha
Helix 50	AF5	F	637	657	Right-handed alpha
Helix 51	AF6	F	672	674	Right-handed 310
Helix 52	AF7	F	675	693	Right-handed alpha
Helix 53	AF8	F	704	709	Right-handed alpha
Helix 54	AF9	F	714	723	Right-handed alpha
Helix 55	AG1	F	734	738	Right-handed 310
Helix 56	AG2	F	789	808	Right-handed alpha
Helix 57	AG3	F	811	824	Right-handed alpha
Helix 58	AG4	F	827	836	Right-handed alpha
Helix 59	AG5	F	839	855	Right-handed alpha
Helix 60	AG6	F	874	880	Right-handed alpha
Helix 61	AG7	F	889	901	Right-handed alpha
Helix 62	AG8	F	909	937	Right-handed alpha
Helix 63	AG9	F	944	960	Right-handed alpha
Helix 64	AH1	F	1000	1002	Right-handed 310
Helix 65	AH2	F	1010	1013	Right-handed 310
Helix 66	AH3	F	1014	1019	Right-handed alpha
Helix 67	AH4	F	1024	1031	Right-handed alpha
Helix 68	AH5	F	1052	1069	Right-handed alpha
Helix 69	AH6	F	1112	1127	Right-handed alpha
Helix 70	AH7	F	1176	1187	Right-handed alpha
Helix 71	AH8	G	4	9	Right-handed 310
Helix 72	AH9	G	20	36	Right-handed alpha
Helix 73	AI1	G	54	76	Right-handed alpha
Helix 74	AI2	G	94	111	Right-handed alpha
Helix 75	AI3	G	121	130	Right-handed alpha
Helix 76	AI4	G	137	142	Right-handed alpha
Helix 77	AI5	G	146	157	Right-handed alpha
Helix 78	AI6	G	162	178	Right-handed alpha
Helix 79	AI7	G	183	208	Right-handed alpha
Helix 80	AI8	G	217	227	Right-handed alpha
Helix 81	AI9	G	229	234	Right-handed alpha
Helix 82	AJ1	G	244	250	Right-handed alpha
Helix 83	AJ2	G	276	287	Right-handed alpha
Helix 84	AJ3	G	293	304	Right-handed alpha
Helix 85	AJ4	G	312	316	Right-handed 310
Helix 86	AJ5	G	318	321	Right-handed 310
Helix 87	AJ6	G	322	336	Right-handed alpha
Helix 88	AJ7	G	401	433	Right-handed alpha
Helix 89	AJ8	G	443	459	Right-handed alpha
Helix 90	AJ9	G	464	472	Right-handed alpha
Helix 91	AK1	G	474	478	Right-handed 310
Helix 92	AK2	G	524	535	Right-handed alpha
Helix 93	AK3	G	558	564	Right-handed alpha
Helix 94	AK4	G	565	568	Right-handed 310
Helix 95	AK5	G	572	587	Right-handed alpha
Helix 96	AK6	G	604	616	Right-handed alpha
Helix 97	AK7	G	621	629	Right-handed alpha
Helix 98	AK8	G	636	656	Right-handed alpha
Helix 99	AK9	G	672	674	Right-handed 310
Helix 100	AL1	G	675	693	Right-handed alpha
Helix 101	AL2	G	713	723	Right-handed alpha
Helix 102	AL3	G	733	737	Right-handed alpha
Helix 103	AL4	G	747	751	Right-handed 310
Helix 104	AL5	G	790	808	Right-handed alpha
Helix 105	AL6	G	811	825	Right-handed alpha
Helix 106	AL7	G	827	836	Right-handed alpha
Helix 107	AL8	G	839	855	Right-handed alpha
Helix 108	AL9	G	873	879	Right-handed alpha
Helix 109	AM1	G	890	901	Right-handed alpha
Helix 110	AM2	G	909	939	Right-handed alpha
Helix 111	AM3	G	944	960	Right-handed alpha
Helix 112	AM4	G	1000	1002	Right-handed 310
Helix 113	AM5	G	1009	1013	Right-handed 310
Helix 114	AM6	G	1014	1019	Right-handed alpha
Helix 115	AM7	G	1024	1032	Right-handed alpha
Helix 116	AM8	G	1046	1051	Right-handed alpha
Helix 117	AM9	G	1052	1071	Right-handed alpha
Helix 118	AN1	G	1111	1126	Right-handed alpha
Helix 119	AN2	G	1176	1189	Right-handed alpha

There are 26 sheets in PDB entry 9BGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	275	first strand
Strand 2	E	14	22	anti-parallel
Strand 3	E	497	509	anti-parallel
Strand 4	E	637	643	anti-parallel
Strand 5	E	619	622	anti-parallel
Strand 6	E	611	614	anti-parallel
Strand 7	E	281	282	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	275	first strand
Strand 2	E	14	22	anti-parallel
Strand 3	E	497	509	anti-parallel
Strand 4	E	489	492	anti-parallel
Strand 5	E	425	429	anti-parallel
Strand 6	E	446	452	anti-parallel
Strand 7	E	455	460	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	66	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	95	96	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	144	first strand
Strand 2	E	152	164	anti-parallel
Strand 3	E	170	182	anti-parallel
Strand 4	E	220	222	anti-parallel
Strand 5	E	202	204	anti-parallel
Strand 6	E	213	214	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	631	632	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	335	first strand
Strand 2	E	305	309	parallel
Strand 3	E	344	348	parallel
Strand 4	E	375	378	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	537	543	parallel
Strand 3	F	267	272	parallel
Strand 4	F	87	92	parallel
Strand 5	F	239	243	parallel
Strand 6	F	132	134	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	252	first strand
Strand 2	F	257	258	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	514	521	anti-parallel
Strand 3	F	499	506	anti-parallel
Strand 4	F	354	358	anti-parallel
Strand 5	F	364	366	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	344	first strand
Strand 2	F	383	386	parallel
Strand 3	F	373	374	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	595	601	first strand
Strand 2	F	865	871	parallel
Strand 3	F	773	776	parallel
Strand 4	F	662	667	parallel
Strand 5	F	726	732	parallel
Strand 6	F	697	700	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	744	745	first strand
Strand 2	F	768	769	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	974	975	first strand
Strand 2	F	1043	1044	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	998	first strand
Strand 2	F	983	986	anti-parallel
Strand 3	F	1006	1008	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1072	1073	first strand
Strand 2	F	1086	1089	anti-parallel
Strand 3	F	1097	1101	anti-parallel
Strand 4	F	1130	1134	parallel
Strand 5	F	1161	1164	parallel
Strand 6	F	1145	1147	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	538	542	parallel
Strand 3	G	268	272	parallel
Strand 4	G	88	92	parallel
Strand 5	G	239	243	parallel
Strand 6	G	132	134	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	114	first strand
Strand 2	G	117	118	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	251	252	first strand
Strand 2	G	257	258	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	292	first strand
Strand 2	G	514	521	anti-parallel
Strand 3	G	499	506	anti-parallel
Strand 4	G	354	358	anti-parallel
Strand 5	G	364	366	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	341	344	first strand
Strand 2	G	382	386	parallel
Strand 3	G	373	374	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	595	601	first strand
Strand 2	G	865	871	parallel
Strand 3	G	773	776	parallel
Strand 4	G	662	667	parallel
Strand 5	G	726	732	parallel
Strand 6	G	697	700	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	756	757	first strand
Strand 2	G	861	862	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	974	976	first strand
Strand 2	G	1042	1044	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	997	998	first strand
Strand 2	G	983	986	anti-parallel
Strand 3	G	1006	1008	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1072	1075	first strand
Strand 2	G	1086	1089	anti-parallel
Strand 3	G	1097	1102	anti-parallel
Strand 4	G	1130	1135	parallel
Strand 5	G	1161	1164	parallel
Strand 6	G	1145	1147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGK