Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BGP entry

There are 4 chains in PDB entry 9BGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 184
A
 THR 186HIS 372
B
 MET 1ARG 184
B
 THR 186HIS 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9BGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
53 65Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
107 118Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
138 149Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
233 244Right-handed alpha
Helix 10
AB1
A
246 265Right-handed alpha
Helix 11
AB2
A
265 271Right-handed alpha
Helix 12
AB3
A
297 308Right-handed alpha
Helix 13
AB4
A
320 322Right-handed 310
Helix 14
AB5
A
327 333Right-handed alpha
Helix 15
AB6
A
335 344Right-handed alpha
Helix 16
AB7
A
355 372Right-handed alpha
Helix 17
AB8
B
10 24Right-handed alpha
Helix 18
AB9
B
29 44Right-handed alpha
Helix 19
AC1
B
53 65Right-handed alpha
Helix 20
AC2
B
81 90Right-handed alpha
Helix 21
AC3
B
107 118Right-handed alpha
Helix 22
AC4
B
131 135Right-handed 310
Helix 23
AC5
B
138 149Right-handed alpha
Helix 24
AC6
B
199 211Right-handed alpha
Helix 25
AC7
B
233 244Right-handed alpha
Helix 26
AC8
B
246 271Right-handed alpha
Helix 27
AC9
B
297 308Right-handed alpha
Helix 28
AD1
B
320 322Right-handed 310
Helix 29
AD2
B
327 333Right-handed alpha
Helix 30
AD3
B
335 344Right-handed alpha
Helix 31
AD4
B
355 372Right-handed alpha
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There are 10 sheets in PDB entry 9BGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
152 156parallel
Strand 5
A
123 127parallel
Strand 6
A
71 76parallel
Strand 7
A
93 97parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
317 318anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
222 223anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
288 292anti-parallel
Strand 3
A
345 348anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
176 180anti-parallel
Strand 4
B
152 156parallel
Strand 5
B
123 127parallel
Strand 6
B
71 76parallel
Strand 7
B
93 97parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
317 318anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
222 223anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
288 292anti-parallel
Strand 3
B
345 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il