Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BGV entry

There are 2 chains in PDB entry 9BGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 20	LYS 806
B	GLY 20	LYS 806

There are 57 helices in PDB entry 9BGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	28	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	64	69	Right-handed 310
Helix 5	AA5	A	70	74	Right-handed 310
Helix 6	AA6	A	76	88	Right-handed alpha
Helix 7	AA7	A	133	153	Right-handed alpha
Helix 8	AA8	A	170	178	Right-handed alpha
Helix 9	AA9	A	201	210	Right-handed alpha
Helix 10	AB1	A	256	274	Right-handed alpha
Helix 11	AB2	A	278	294	Right-handed alpha
Helix 12	AB3	A	352	381	Right-handed alpha
Helix 13	AB4	A	394	408	Right-handed alpha
Helix 14	AB5	A	421	429	Right-handed alpha
Helix 15	AB6	A	430	448	Right-handed alpha
Helix 16	AB7	A	471	485	Right-handed alpha
Helix 17	AB8	A	514	531	Right-handed alpha
Helix 18	AB9	A	542	562	Right-handed alpha
Helix 19	AC1	A	598	610	Right-handed alpha
Helix 20	AC2	A	611	632	Right-handed alpha
Helix 21	AC3	A	653	666	Right-handed alpha
Helix 22	AC4	A	677	682	Right-handed alpha
Helix 23	AC5	A	687	699	Right-handed alpha
Helix 24	AC6	A	728	733	Right-handed alpha
Helix 25	AC7	A	740	756	Right-handed alpha
Helix 26	AC8	A	766	776	Right-handed alpha
Helix 27	AC9	A	791	793	Right-handed 310
Helix 28	AD1	A	794	802	Right-handed alpha
Helix 29	AD2	B	22	28	Right-handed alpha
Helix 30	AD3	B	46	54	Right-handed alpha
Helix 31	AD4	B	56	61	Right-handed alpha
Helix 32	AD5	B	76	88	Right-handed alpha
Helix 33	AD6	B	133	152	Right-handed alpha
Helix 34	AD7	B	170	178	Right-handed alpha
Helix 35	AD8	B	180	185	Right-handed alpha
Helix 36	AD9	B	188	193	Right-handed alpha
Helix 37	AE1	B	201	208	Right-handed alpha
Helix 38	AE2	B	256	274	Right-handed alpha
Helix 39	AE3	B	278	294	Right-handed alpha
Helix 40	AE4	B	352	382	Right-handed alpha
Helix 41	AE5	B	394	408	Right-handed alpha
Helix 42	AE6	B	422	429	Right-handed alpha
Helix 43	AE7	B	430	449	Right-handed alpha
Helix 44	AE8	B	471	485	Right-handed alpha
Helix 45	AE9	B	512	531	Right-handed alpha
Helix 46	AF1	B	539	563	Right-handed alpha
Helix 47	AF2	B	598	610	Right-handed alpha
Helix 48	AF3	B	611	633	Right-handed alpha
Helix 49	AF4	B	654	666	Right-handed alpha
Helix 50	AF5	B	668	670	Right-handed 310
Helix 51	AF6	B	685	690	Right-handed alpha
Helix 52	AF7	B	691	699	Right-handed alpha
Helix 53	AF8	B	714	719	Right-handed alpha
Helix 54	AF9	B	728	733	Right-handed alpha
Helix 55	AG1	B	738	756	Right-handed alpha
Helix 56	AG2	B	766	777	Right-handed alpha
Helix 57	AG3	B	794	802	Right-handed alpha

There are 15 sheets in PDB entry 9BGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	123	132	anti-parallel
Strand 4	A	108	120	anti-parallel
Strand 5	A	99	102	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	246	252	anti-parallel
Strand 4	A	229	240	anti-parallel
Strand 5	A	216	223	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	314	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	338	346	anti-parallel
Strand 4	A	325	332	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	459	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	500	504	anti-parallel
Strand 5	A	534	536	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	586	588	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	A	580	584	parallel
Strand 3	A	571	574	anti-parallel
Strand 4	A	780	782	anti-parallel
Strand 5	A	758	762	parallel
Strand 6	A	724	726	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	676	first strand
Strand 2	A	701	704	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	123	132	anti-parallel
Strand 4	B	108	113	anti-parallel
Strand 5	B	99	102	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	123	132	anti-parallel
Strand 4	B	116	120	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	246	255	anti-parallel
Strand 3	B	229	240	anti-parallel
Strand 4	B	219	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	314	first strand
Strand 2	B	297	305	anti-parallel
Strand 3	B	338	347	anti-parallel
Strand 4	B	324	332	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	459	first strand
Strand 2	B	462	467	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	500	507	anti-parallel
Strand 5	B	534	537	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	496	497	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	791	first strand
Strand 2	B	566	574	anti-parallel
Strand 3	B	780	783	anti-parallel
Strand 4	B	758	764	parallel
Strand 5	B	724	727	parallel
Strand 6	B	703	704	parallel
Strand 7	B	672	676	parallel
Strand 8	B	640	642	parallel
Strand 9	B	580	588	parallel
Strand 10	B	566	574	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	591	first strand
Strand 2	B	595	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BGV