Analysis of interatomic Contacts of Structural Units in PDB entry:
9BHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BHL entry

There are 3 chains in PDB entry 9BHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLY 41	ASN 340
N	GLN 1	ASP 106

There are 23 helices in PDB entry 9BHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	40	Right-handed alpha
Helix 2	AA2	A	52	64	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	252	279	Right-handed alpha
Helix 5	AA5	A	294	304	Right-handed alpha
Helix 6	AA6	A	307	312	Right-handed alpha
Helix 7	AA7	A	313	318	Right-handed alpha
Helix 8	AA8	A	331	352	Right-handed alpha
Helix 9	AA9	A	370	391	Right-handed alpha
Helix 10	AB1	B	85	87	Right-handed 310
Helix 11	AB2	N	53	56	Right-handed 310
Helix 12	AB3	N	87	91	Right-handed 310
Helix 13	AB4	R	6	45	Right-handed alpha
Helix 14	AB5	R	48	75	Right-handed alpha
Helix 15	AB6	R	83	118	Right-handed alpha
Helix 16	AB7	R	127	147	Right-handed alpha
Helix 17	AB8	R	147	152	Right-handed alpha
Helix 18	AB9	R	177	192	Right-handed alpha
Helix 19	AC1	R	192	213	Right-handed alpha
Helix 20	AC2	R	217	256	Right-handed alpha
Helix 21	AC3	R	261	280	Right-handed alpha
Helix 22	AC4	R	280	292	Right-handed alpha
Helix 23	AC5	R	296	305	Right-handed alpha

There are 13 sheets in PDB entry 9BHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	244	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	240	243	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	262	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	330	331	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	338	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	71	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	124	126	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	59	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	93	98	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	155	160	first strand
Strand 2	R	165	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BHL