Analysis of interatomic Contacts of Structural Units in PDB entry:
9BHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BHM entry

There are 4 chains in PDB entry 9BHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	CYS 13	HIS 294
A	GLU 16	LEU 394
B	GLY 41	ASN 340
N	GLN 1	THR 125

There are 19 helices in PDB entry 9BHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	17	52	Right-handed alpha
Helix 2	AA2	R	54	82	Right-handed alpha
Helix 3	AA3	R	90	124	Right-handed alpha
Helix 4	AA4	R	134	158	Right-handed alpha
Helix 5	AA5	R	159	161	Right-handed 310
Helix 6	AA6	R	179	215	Right-handed alpha
Helix 7	AA7	R	219	254	Right-handed alpha
Helix 8	AA8	R	257	288	Right-handed alpha
Helix 9	AA9	A	17	39	Right-handed alpha
Helix 10	AB1	A	52	58	Right-handed alpha
Helix 11	AB2	A	233	239	Right-handed 310
Helix 12	AB3	A	252	279	Right-handed alpha
Helix 13	AB4	A	281	285	Right-handed 310
Helix 14	AB5	A	293	304	Right-handed alpha
Helix 15	AB6	A	307	312	Right-handed alpha
Helix 16	AB7	A	313	317	Right-handed 310
Helix 17	AB8	A	332	351	Right-handed alpha
Helix 18	AB9	A	370	391	Right-handed alpha
Helix 19	AC1	N	62	65	Right-handed 310

There are 12 sheets in PDB entry 9BHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	163	166	first strand
Strand 2	R	169	172	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	124	125	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	60	first strand
Strand 2	N	46	51	anti-parallel
Strand 3	N	34	38	anti-parallel
Strand 4	N	94	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BHM