Analysis of interatomic Contacts of Structural Units in PDB entry:
9BI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BI4 entry

There are 6 chains in PDB entry 9BI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	THR 1311
D	MET 1	THR 1311
B	MET 1	THR 507
E	A 12	A 33
A	MET 1	ARG 522
F	T 12	T 33

There are 62 helices in PDB entry 9BI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	39	52	Right-handed alpha
Helix 2	AA2	C	67	72	Right-handed alpha
Helix 3	AA3	C	131	144	Right-handed alpha
Helix 4	AA4	C	146	153	Right-handed alpha
Helix 5	AA5	C	167	179	Right-handed alpha
Helix 6	AA6	C	181	239	Right-handed alpha
Helix 7	AA7	C	1090	1102	Right-handed alpha
Helix 8	AA8	C	1108	1145	Right-handed alpha
Helix 9	AA9	C	1146	1161	Right-handed alpha
Helix 10	AB1	C	1205	1222	Right-handed alpha
Helix 11	AB2	C	1241	1259	Right-handed alpha
Helix 12	AB3	C	1273	1280	Right-handed alpha
Helix 13	AB4	C	1281	1286	Right-handed alpha
Helix 14	AB5	C	1308	1310	Right-handed 310
Helix 15	AB6	D	39	52	Right-handed alpha
Helix 16	AB7	D	67	72	Right-handed alpha
Helix 17	AB8	D	131	144	Right-handed alpha
Helix 18	AB9	D	146	153	Right-handed alpha
Helix 19	AC1	D	162	166	Right-handed 310
Helix 20	AC2	D	167	179	Right-handed alpha
Helix 21	AC3	D	181	218	Right-handed alpha
Helix 22	AC4	D	219	239	Right-handed alpha
Helix 23	AC5	D	1090	1102	Right-handed alpha
Helix 24	AC6	D	1106	1135	Right-handed alpha
Helix 25	AC7	D	1135	1146	Right-handed alpha
Helix 26	AC8	D	1147	1159	Right-handed alpha
Helix 27	AC9	D	1207	1224	Right-handed alpha
Helix 28	AD1	D	1241	1261	Right-handed alpha
Helix 29	AD2	D	1273	1281	Right-handed alpha
Helix 30	AD3	D	1282	1285	Right-handed 310
Helix 31	AD4	D	1308	1310	Right-handed 310
Helix 32	AD5	B	30	45	Right-handed alpha
Helix 33	AD6	B	64	79	Right-handed alpha
Helix 34	AD7	B	92	96	Right-handed 310
Helix 35	AD8	B	105	109	Right-handed 310
Helix 36	AD9	B	137	143	Right-handed alpha
Helix 37	AE1	B	181	191	Right-handed alpha
Helix 38	AE2	B	272	276	Right-handed 310
Helix 39	AE3	B	312	314	Right-handed 310
Helix 40	AE4	B	324	349	Right-handed alpha
Helix 41	AE5	B	387	392	Right-handed alpha
Helix 42	AE6	B	393	395	Right-handed 310
Helix 43	AE7	B	446	451	Right-handed alpha
Helix 44	AE8	B	463	477	Right-handed alpha
Helix 45	AE9	B	482	500	Right-handed alpha
Helix 46	AF1	B	501	506	Right-handed 310
Helix 47	AF2	A	30	45	Right-handed alpha
Helix 48	AF3	A	64	78	Right-handed alpha
Helix 49	AF4	A	92	97	Right-handed alpha
Helix 50	AF5	A	105	109	Right-handed 310
Helix 51	AF6	A	135	143	Right-handed alpha
Helix 52	AF7	A	181	191	Right-handed alpha
Helix 53	AF8	A	272	276	Right-handed 310
Helix 54	AF9	A	325	349	Right-handed alpha
Helix 55	AG1	A	387	393	Right-handed alpha
Helix 56	AG2	A	394	396	Right-handed 310
Helix 57	AG3	A	449	458	Right-handed alpha
Helix 58	AG4	A	463	477	Right-handed alpha
Helix 59	AG5	A	481	491	Right-handed alpha
Helix 60	AG6	A	492	500	Right-handed alpha
Helix 61	AG7	A	501	506	Right-handed 310
Helix 62	AG8	A	509	522	Right-handed alpha

There are 17 sheets in PDB entry 9BI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	77	85	anti-parallel
Strand 4	C	91	99	anti-parallel
Strand 5	C	110	111	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	77	85	anti-parallel
Strand 4	C	91	99	anti-parallel
Strand 5	C	115	119	anti-parallel
Strand 6	C	127	129	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1230	1234	first strand
Strand 2	C	1266	1270	parallel
Strand 3	C	29	34	parallel
Strand 4	C	1288	1294	parallel
Strand 5	C	1300	1302	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1230	1234	first strand
Strand 2	C	1266	1270	parallel
Strand 3	C	29	34	parallel
Strand 4	C	1288	1294	parallel
Strand 5	C	1305	1306	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1170	1173	first strand
Strand 2	C	1187	1192	anti-parallel
Strand 3	C	1197	1199	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	3	10	anti-parallel
Strand 3	D	75	85	anti-parallel
Strand 4	D	91	102	anti-parallel
Strand 5	D	107	111	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	3	10	anti-parallel
Strand 3	D	75	85	anti-parallel
Strand 4	D	91	102	anti-parallel
Strand 5	D	115	118	anti-parallel
Strand 6	D	127	129	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1230	1234	first strand
Strand 2	D	1266	1270	parallel
Strand 3	D	29	34	parallel
Strand 4	D	1288	1294	parallel
Strand 5	D	1300	1306	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1170	1174	first strand
Strand 2	D	1186	1192	anti-parallel
Strand 3	D	1197	1199	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	118	120	parallel
Strand 3	B	50	53	parallel
Strand 4	B	8	14	parallel
Strand 5	B	279	286	anti-parallel
Strand 6	B	292	297	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	195	196	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	167	first strand
Strand 2	B	170	176	anti-parallel
Strand 3	B	206	212	parallel
Strand 4	B	236	239	parallel
Strand 5	B	257	261	parallel
Strand 6	B	246	252	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	310	first strand
Strand 2	B	364	370	parallel
Strand 3	B	406	409	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	8	14	parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	296	297	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	170	176	anti-parallel
Strand 4	A	206	212	parallel
Strand 5	A	236	239	parallel
Strand 6	A	257	261	parallel
Strand 7	A	246	252	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	194	196	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	310	first strand
Strand 2	A	364	370	parallel
Strand 3	A	406	409	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BI4