Analysis of interatomic Contacts of Structural Units in PDB entry:
9BI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BI5 entry

There are 4 chains in PDB entry 9BI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 3	THR 1311
A	ASP 2	ARG 412
C	MET 1	THR 1311
B	MET 1	ARG 412

There are 48 helices in PDB entry 9BI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	41	48	Right-handed alpha
Helix 2	AA2	D	48	53	Right-handed alpha
Helix 3	AA3	D	67	71	Right-handed 310
Helix 4	AA4	D	134	144	Right-handed alpha
Helix 5	AA5	D	146	151	Right-handed alpha
Helix 6	AA6	D	157	161	Right-handed 310
Helix 7	AA7	D	171	178	Right-handed alpha
Helix 8	AA8	D	183	200	Right-handed alpha
Helix 9	AA9	D	200	209	Right-handed alpha
Helix 10	AB1	D	1131	1136	Right-handed alpha
Helix 11	AB2	D	1145	1148	Right-handed 310
Helix 12	AB3	D	1149	1158	Right-handed alpha
Helix 13	AB4	D	1209	1221	Right-handed alpha
Helix 14	AB5	D	1245	1259	Right-handed alpha
Helix 15	AB6	D	1273	1280	Right-handed alpha
Helix 16	AB7	D	1306	1310	Right-handed 310
Helix 17	AB8	A	30	45	Right-handed alpha
Helix 18	AB9	A	64	80	Right-handed alpha
Helix 19	AC1	A	105	109	Right-handed 310
Helix 20	AC2	A	135	143	Right-handed alpha
Helix 21	AC3	A	181	191	Right-handed alpha
Helix 22	AC4	A	226	230	Right-handed 310
Helix 23	AC5	A	271	275	Right-handed 310
Helix 24	AC6	A	325	350	Right-handed alpha
Helix 25	AC7	A	387	392	Right-handed alpha
Helix 26	AC8	A	393	396	Right-handed 310
Helix 27	AC9	C	39	44	Right-handed alpha
Helix 28	AD1	C	45	53	Right-handed alpha
Helix 29	AD2	C	67	72	Right-handed alpha
Helix 30	AD3	C	131	144	Right-handed alpha
Helix 31	AD4	C	167	180	Right-handed alpha
Helix 32	AD5	C	1150	1153	Right-handed 310
Helix 33	AD6	C	1154	1160	Right-handed alpha
Helix 34	AD7	C	1208	1224	Right-handed alpha
Helix 35	AD8	C	1241	1249	Right-handed alpha
Helix 36	AD9	C	1249	1260	Right-handed alpha
Helix 37	AE1	C	1273	1278	Right-handed alpha
Helix 38	AE2	C	1281	1285	Right-handed 310
Helix 39	AE3	C	1308	1310	Right-handed 310
Helix 40	AE4	B	30	45	Right-handed alpha
Helix 41	AE5	B	64	80	Right-handed alpha
Helix 42	AE6	B	105	109	Right-handed 310
Helix 43	AE7	B	135	144	Right-handed alpha
Helix 44	AE8	B	181	191	Right-handed alpha
Helix 45	AE9	B	226	230	Right-handed 310
Helix 46	AF1	B	271	275	Right-handed 310
Helix 47	AF2	B	322	350	Right-handed alpha
Helix 48	AF3	B	387	392	Right-handed alpha

There are 21 sheets in PDB entry 9BI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	21	24	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	1290	1293	parallel
Strand 3	D	1301	1302	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	85	first strand
Strand 2	D	91	102	anti-parallel
Strand 3	D	107	119	anti-parallel
Strand 4	D	127	129	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1169	1171	first strand
Strand 2	D	1189	1191	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1229	1231	first strand
Strand 2	D	1265	1267	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	118	121	parallel
Strand 3	A	50	54	parallel
Strand 4	A	9	14	parallel
Strand 5	A	279	285	anti-parallel
Strand 6	A	292	293	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	118	121	parallel
Strand 3	A	50	54	parallel
Strand 4	A	9	14	parallel
Strand 5	A	279	285	anti-parallel
Strand 6	A	296	297	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	165	167	anti-parallel
Strand 3	A	170	171	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	194	196	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	208	212	parallel
Strand 3	A	238	239	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	261	262	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	310	first strand
Strand 2	A	364	370	parallel
Strand 3	A	406	409	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1231	1234	first strand
Strand 2	C	1267	1270	parallel
Strand 3	C	29	33	parallel
Strand 4	C	1288	1294	parallel
Strand 5	C	1300	1302	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1231	1234	first strand
Strand 2	C	1267	1270	parallel
Strand 3	C	29	33	parallel
Strand 4	C	1288	1294	parallel
Strand 5	C	1305	1306	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	98	99	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	117	118	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	118	120	parallel
Strand 3	B	50	53	parallel
Strand 4	B	9	14	parallel
Strand 5	B	279	285	anti-parallel
Strand 6	B	292	293	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	118	120	parallel
Strand 3	B	50	53	parallel
Strand 4	B	9	14	parallel
Strand 5	B	279	285	anti-parallel
Strand 6	B	296	297	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	170	176	anti-parallel
Strand 4	B	206	212	parallel
Strand 5	B	236	239	parallel
Strand 6	B	258	260	parallel
Strand 7	B	250	251	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	194	196	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	364	368	parallel
Strand 3	B	406	407	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BI5