Analysis of interatomic Contacts of Structural Units in PDB entry:
9BIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BIE entry

There are 4 chains in PDB entry 9BIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13PRO 733
B
 MET 1GLU 98
C
 MET 17CYS 112
P
 GLY 2LEU 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9BIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
29 33Right-handed alpha
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
69 74Right-handed alpha
Helix 5
AA5
A
75 77Right-handed 310
Helix 6
AA6
A
94 102Right-handed alpha
Helix 7
AA7
A
120 130Right-handed alpha
Helix 8
AA8
A
131 138Right-handed alpha
Helix 9
AA9
A
175 183Right-handed alpha
Helix 10
AB1
A
201 208Right-handed 310
Helix 11
AB2
A
225 235Right-handed alpha
Helix 12
AB3
A
253 261Right-handed alpha
Helix 13
AB4
A
280 291Right-handed alpha
Helix 14
AB5
A
323 334Right-handed alpha
Helix 15
AB6
A
337 353Right-handed alpha
Helix 16
AB7
A
359 373Right-handed alpha
Helix 17
AB8
A
376 391Right-handed alpha
Helix 18
AB9
A
393 398Right-handed alpha
Helix 19
AC1
A
400 418Right-handed alpha
Helix 20
AC2
A
421 433Right-handed alpha
Helix 21
AC3
A
434 440Right-handed alpha
Helix 22
AC4
A
444 457Right-handed alpha
Helix 23
AC5
A
461 477Right-handed alpha
Helix 24
AC6
A
480 490Right-handed alpha
Helix 25
AC7
A
491 508Right-handed alpha
Helix 26
AC8
A
511 525Right-handed alpha
Helix 27
AC9
A
528 538Right-handed alpha
Helix 28
AD1
A
540 551Right-handed alpha
Helix 29
AD2
A
554 569Right-handed alpha
Helix 30
AD3
A
574 578Right-handed 310
Helix 31
AD4
A
580 592Right-handed alpha
Helix 32
AD5
A
595 611Right-handed alpha
Helix 33
AD6
A
620 636Right-handed alpha
Helix 34
AD7
A
651 655Right-handed 310
Helix 35
AD8
A
663 681Right-handed alpha
Helix 36
AD9
A
681 693Right-handed alpha
Helix 37
AE1
A
694 703Right-handed alpha
Helix 38
AE2
A
708 730Right-handed alpha
Helix 39
AE3
B
23 36Right-handed alpha
Helix 40
AE4
C
32 37Right-handed alpha
Helix 41
AE5
C
39 47Right-handed alpha
Helix 42
AE6
C
49 53Right-handed 310
Helix 43
AE7
C
66 84Right-handed alpha
Helix 44
AE8
C
99 110Right-handed alpha
Helix 45
AE9
P
11 16Right-handed alpha
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There are 5 sheets in PDB entry 9BIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
42 44anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
109 111parallel
Strand 3
A
140 142parallel
Strand 4
A
166 168parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
296 298parallel
Strand 3
A
317 319parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
73 77parallel
Strand 4
B
44 45anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
C
28 31parallel
Strand 3
C
19 22anti-parallel
Strand 4
C
60 61parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il