Analysis of interatomic Contacts of Structural Units in PDB entry:
9BIH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BIH entry

There are 8 chains in PDB entry 9BIH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU -1	GLN 347
B	LEU -1	LYS 345
C	LEU -1	LYS 345
D	LEU -1	LYS 345
E	LEU -1	LYS 345
F	LEU -1	LYS 345
G	U 1	A 28
H	U 8	A 34

There are 58 helices in PDB entry 9BIH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	51	61	Right-handed alpha
Helix 3	AA3	A	69	77	Right-handed alpha
Helix 4	AA4	A	130	138	Right-handed alpha
Helix 5	AA5	A	208	217	Right-handed alpha
Helix 6	AA6	A	218	226	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed alpha
Helix 8	AA8	A	251	262	Right-handed alpha
Helix 9	AA9	A	299	308	Right-handed alpha
Helix 10	AB1	B	2	14	Right-handed alpha
Helix 11	AB2	B	51	61	Right-handed alpha
Helix 12	AB3	B	69	76	Right-handed alpha
Helix 13	AB4	B	114	118	Right-handed 310
Helix 14	AB5	B	130	138	Right-handed alpha
Helix 15	AB6	B	208	217	Right-handed alpha
Helix 16	AB7	B	218	226	Right-handed alpha
Helix 17	AB8	B	232	237	Right-handed alpha
Helix 18	AB9	B	251	262	Right-handed alpha
Helix 19	AC1	B	299	309	Right-handed alpha
Helix 20	AC2	C	2	14	Right-handed alpha
Helix 21	AC3	C	51	61	Right-handed alpha
Helix 22	AC4	C	69	76	Right-handed alpha
Helix 23	AC5	C	130	138	Right-handed alpha
Helix 24	AC6	C	208	217	Right-handed alpha
Helix 25	AC7	C	218	226	Right-handed alpha
Helix 26	AC8	C	232	237	Right-handed alpha
Helix 27	AC9	C	251	262	Right-handed alpha
Helix 28	AD1	C	299	308	Right-handed alpha
Helix 29	AD2	D	2	14	Right-handed alpha
Helix 30	AD3	D	51	61	Right-handed alpha
Helix 31	AD4	D	69	76	Right-handed alpha
Helix 32	AD5	D	114	118	Right-handed 310
Helix 33	AD6	D	130	138	Right-handed alpha
Helix 34	AD7	D	208	217	Right-handed alpha
Helix 35	AD8	D	218	227	Right-handed alpha
Helix 36	AD9	D	232	237	Right-handed alpha
Helix 37	AE1	D	251	262	Right-handed alpha
Helix 38	AE2	D	299	308	Right-handed alpha
Helix 39	AE3	E	2	14	Right-handed alpha
Helix 40	AE4	E	51	61	Right-handed alpha
Helix 41	AE5	E	69	76	Right-handed alpha
Helix 42	AE6	E	114	118	Right-handed 310
Helix 43	AE7	E	130	138	Right-handed alpha
Helix 44	AE8	E	208	217	Right-handed alpha
Helix 45	AE9	E	218	226	Right-handed alpha
Helix 46	AF1	E	232	237	Right-handed alpha
Helix 47	AF2	E	251	262	Right-handed alpha
Helix 48	AF3	E	299	309	Right-handed alpha
Helix 49	AF4	F	2	14	Right-handed alpha
Helix 50	AF5	F	51	61	Right-handed alpha
Helix 51	AF6	F	69	76	Right-handed alpha
Helix 52	AF7	F	114	118	Right-handed 310
Helix 53	AF8	F	130	138	Right-handed alpha
Helix 54	AF9	F	208	217	Right-handed alpha
Helix 55	AG1	F	218	227	Right-handed alpha
Helix 56	AG2	F	232	237	Right-handed alpha
Helix 57	AG3	F	251	262	Right-handed alpha
Helix 58	AG4	F	299	308	Right-handed alpha

There are 48 sheets in PDB entry 9BIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	39	45	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	122	124	parallel
Strand 3	A	141	145	parallel
Strand 4	A	178	183	anti-parallel
Strand 5	A	155	156	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	122	124	parallel
Strand 3	A	141	145	parallel
Strand 4	A	178	183	anti-parallel
Strand 5	A	186	188	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	93	94	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	107	109	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	166	168	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	282	first strand
Strand 2	A	289	296	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	326	335	anti-parallel
Strand 3	A	338	345	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	39	45	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	122	125	parallel
Strand 3	B	141	145	parallel
Strand 4	B	178	183	anti-parallel
Strand 5	B	155	156	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	122	125	parallel
Strand 3	B	141	145	parallel
Strand 4	B	178	183	anti-parallel
Strand 5	B	186	188	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	93	94	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	107	109	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	166	169	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	276	282	anti-parallel
Strand 3	B	289	296	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	323	first strand
Strand 2	B	326	333	anti-parallel
Strand 3	B	341	344	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	31	36	anti-parallel
Strand 3	C	39	45	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	161	163	anti-parallel
Strand 3	C	166	168	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	122	125	parallel
Strand 3	C	141	145	parallel
Strand 4	C	178	183	anti-parallel
Strand 5	C	155	156	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	122	125	parallel
Strand 3	C	141	145	parallel
Strand 4	C	178	183	anti-parallel
Strand 5	C	186	188	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	93	94	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	107	109	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	267	first strand
Strand 2	C	277	283	anti-parallel
Strand 3	C	289	295	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	323	first strand
Strand 2	C	326	334	anti-parallel
Strand 3	C	339	344	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	28	first strand
Strand 2	D	31	36	anti-parallel
Strand 3	D	39	45	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	122	125	parallel
Strand 3	D	141	145	parallel
Strand 4	D	178	183	anti-parallel
Strand 5	D	155	156	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	122	125	parallel
Strand 3	D	141	145	parallel
Strand 4	D	178	183	anti-parallel
Strand 5	D	186	188	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	93	94	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	107	109	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	166	168	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	267	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	289	296	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	323	first strand
Strand 2	D	326	333	anti-parallel
Strand 3	D	341	344	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	28	first strand
Strand 2	E	31	36	anti-parallel
Strand 3	E	39	45	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	122	125	parallel
Strand 3	E	141	145	parallel
Strand 4	E	178	183	anti-parallel
Strand 5	E	155	156	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	122	125	parallel
Strand 3	E	141	145	parallel
Strand 4	E	178	183	anti-parallel
Strand 5	E	186	188	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	93	94	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	107	109	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	163	first strand
Strand 2	E	166	168	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	267	first strand
Strand 2	E	277	282	anti-parallel
Strand 3	E	289	295	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	322	first strand
Strand 2	E	327	335	anti-parallel
Strand 3	E	338	344	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	28	first strand
Strand 2	F	31	36	anti-parallel
Strand 3	F	39	45	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	122	125	parallel
Strand 3	F	141	145	parallel
Strand 4	F	178	183	anti-parallel
Strand 5	F	155	156	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	122	125	parallel
Strand 3	F	141	145	parallel
Strand 4	F	178	183	anti-parallel
Strand 5	F	186	188	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	F	93	94	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	107	109	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	163	first strand
Strand 2	F	166	169	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	267	first strand
Strand 2	F	277	283	anti-parallel
Strand 3	F	289	295	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	323	first strand
Strand 2	F	326	334	anti-parallel
Strand 3	F	339	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BIH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BIH