Analysis of interatomic Contacts of Structural Units in PDB entry:
9BIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BIY entry

There are 2 chains in PDB entry 9BIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 374PRO 647
B
 VAL 49THR 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9BIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
381 387Right-handed alpha
Helix 2
AA2
A
441 459Right-handed alpha
Helix 3
AA3
A
469 480Right-handed alpha
Helix 4
AA4
A
486 498Right-handed alpha
Helix 5
AA5
A
504 515Right-handed alpha
Helix 6
AA6
A
519 530Right-handed alpha
Helix 7
AA7
A
540 570Right-handed alpha
Helix 8
AA8
A
597 601Right-handed 310
Helix 9
AA9
A
602 618Right-handed alpha
Helix 10
AB1
B
54 59Right-handed 310
Helix 11
AB2
B
84 99Right-handed alpha
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There are 4 sheets in PDB entry 9BIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
395 405parallel
Strand 3
A
620 633anti-parallel
Strand 4
A
639 644anti-parallel
Strand 5
A
578 582parallel
Strand 6
A
424 430anti-parallel
Strand 7
A
395 405anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
537 539anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
103 108parallel
Strand 3
B
120 131anti-parallel
Strand 4
B
63 75anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
103 108parallel
Strand 3
B
120 131anti-parallel
Strand 4
B
111 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il