Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BJ0 entry

There are 2 chains in PDB entry 9BJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 373PRO 645
B
 SER 373PRO 645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9BJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
381 389Right-handed alpha
Helix 2
AA2
A
441 459Right-handed alpha
Helix 3
AA3
A
469 479Right-handed alpha
Helix 4
AA4
A
486 498Right-handed alpha
Helix 5
AA5
A
504 514Right-handed alpha
Helix 6
AA6
A
519 530Right-handed alpha
Helix 7
AA7
A
540 570Right-handed alpha
Helix 8
AA8
A
597 601Right-handed 310
Helix 9
AA9
A
602 604Right-handed 310
Helix 10
AB1
A
605 618Right-handed alpha
Helix 11
AB2
B
381 387Right-handed alpha
Helix 12
AB3
B
441 459Right-handed alpha
Helix 13
AB4
B
469 479Right-handed alpha
Helix 14
AB5
B
486 496Right-handed alpha
Helix 15
AB6
B
504 516Right-handed alpha
Helix 16
AB7
B
519 529Right-handed alpha
Helix 17
AB8
B
540 570Right-handed alpha
Helix 18
AB9
B
597 601Right-handed 310
Helix 19
AC1
B
602 604Right-handed 310
Helix 20
AC2
B
605 618Right-handed alpha
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There are 5 sheets in PDB entry 9BJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
395 406parallel
Strand 3
A
620 633anti-parallel
Strand 4
A
639 644anti-parallel
Strand 5
A
578 582parallel
Strand 6
A
423 430anti-parallel
Strand 7
A
395 406anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
537 539anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 379first strand
Strand 2
B
395 406parallel
Strand 3
B
620 627anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 379first strand
Strand 2
B
395 406parallel
Strand 3
B
423 430anti-parallel
Strand 4
B
578 582anti-parallel
Strand 5
B
639 643parallel
Strand 6
B
631 633anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
537 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il