Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BJ5 entry

There are 19 chains in PDB entry 9BJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 22ILE 42
A
 ASP 44GLU 154
A
 ILE 156SER 157
A
 GLU 159GLU 195
A
 LEU 197ASN 199
B
 LYS 22ASN 32
B
 CYS 34GLU 154
B
 ILE 156SER 157
B
 GLU 159GLU 195
B
 LEU 197ALA 198
C
 PHE 23GLU 154
C
 ILE 156SER 157
C
 GLU 159GLU 195
C
 LEU 197ASN 199
D
 LYS 26ILE 42
D
 ASP 44GLU 154
D
 ILE 156SER 157
D
 GLU 159GLU 195
D
 LEU 197ALA 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9BJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 51Right-handed alpha
Helix 2
AA2
A
53 75Right-handed alpha
Helix 3
AA3
A
109 116Right-handed alpha
Helix 4
AA4
A
116 130Right-handed alpha
Helix 5
AA5
A
130 139Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
157 177Right-handed alpha
Helix 8
AA8
A
180 198Right-handed alpha
Helix 9
AA9
B
27 51Right-handed alpha
Helix 10
AB1
B
53 76Right-handed alpha
Helix 11
AB2
B
109 115Right-handed alpha
Helix 12
AB3
B
119 129Right-handed alpha
Helix 13
AB4
B
131 138Right-handed alpha
Helix 14
AB5
B
151 155Right-handed 310
Helix 15
AB6
B
157 177Right-handed alpha
Helix 16
AB7
B
180 197Right-handed alpha
Helix 17
AB8
C
27 51Right-handed alpha
Helix 18
AB9
C
53 75Right-handed alpha
Helix 19
AC1
C
109 130Right-handed alpha
Helix 20
AC2
C
130 139Right-handed alpha
Helix 21
AC3
C
151 155Right-handed 310
Helix 22
AC4
C
157 177Right-handed alpha
Helix 23
AC5
C
180 199Right-handed alpha
Helix 24
AC6
D
27 51Right-handed alpha
Helix 25
AC7
D
53 74Right-handed alpha
Helix 26
AC8
D
109 116Right-handed alpha
Helix 27
AC9
D
116 130Right-handed alpha
Helix 28
AD1
D
131 139Right-handed alpha
Helix 29
AD2
D
151 156Right-handed alpha
Helix 30
AD3
D
157 177Right-handed alpha
Helix 31
AD4
D
181 197Right-handed alpha
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There are 4 sheets in PDB entry 9BJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
148 150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
148 150anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 145first strand
Strand 2
C
148 150anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 145first strand
Strand 2
D
148 150anti-parallel
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