Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BJ8 entry

There are 5 chains in PDB entry 9BJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 13	PRO 733
B	MET 1	GLU 98
C	MET 17	CYS 112
D	SER 2	ALA 745
R	LYS 19	HIS 108

There are 80 helices in PDB entry 9BJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	29	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	51	66	Right-handed alpha
Helix 4	AA4	A	71	77	Right-handed 310
Helix 5	AA5	A	94	102	Right-handed alpha
Helix 6	AA6	A	120	130	Right-handed alpha
Helix 7	AA7	A	131	136	Right-handed alpha
Helix 8	AA8	A	175	183	Right-handed alpha
Helix 9	AA9	A	201	208	Right-handed 310
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	253	261	Right-handed alpha
Helix 12	AB3	A	280	291	Right-handed alpha
Helix 13	AB4	A	307	311	Right-handed 310
Helix 14	AB5	A	323	334	Right-handed alpha
Helix 15	AB6	A	337	352	Right-handed alpha
Helix 16	AB7	A	359	373	Right-handed alpha
Helix 17	AB8	A	376	391	Right-handed alpha
Helix 18	AB9	A	392	399	Right-handed 310
Helix 19	AC1	A	400	418	Right-handed alpha
Helix 20	AC2	A	421	433	Right-handed alpha
Helix 21	AC3	A	434	440	Right-handed alpha
Helix 22	AC4	A	445	457	Right-handed alpha
Helix 23	AC5	A	461	477	Right-handed alpha
Helix 24	AC6	A	480	489	Right-handed alpha
Helix 25	AC7	A	491	508	Right-handed alpha
Helix 26	AC8	A	511	525	Right-handed alpha
Helix 27	AC9	A	528	538	Right-handed alpha
Helix 28	AD1	A	540	551	Right-handed alpha
Helix 29	AD2	A	554	571	Right-handed alpha
Helix 30	AD3	A	574	579	Right-handed 310
Helix 31	AD4	A	580	592	Right-handed alpha
Helix 32	AD5	A	595	611	Right-handed alpha
Helix 33	AD6	A	620	636	Right-handed alpha
Helix 34	AD7	A	651	660	Right-handed 310
Helix 35	AD8	A	663	681	Right-handed alpha
Helix 36	AD9	A	681	693	Right-handed alpha
Helix 37	AE1	A	694	703	Right-handed alpha
Helix 38	AE2	A	708	730	Right-handed alpha
Helix 39	AE3	B	23	36	Right-handed alpha
Helix 40	AE4	C	33	38	Right-handed alpha
Helix 41	AE5	C	49	54	Right-handed alpha
Helix 42	AE6	C	66	83	Right-handed alpha
Helix 43	AE7	C	99	110	Right-handed alpha
Helix 44	AE8	D	12	25	Right-handed alpha
Helix 45	AE9	D	26	28	Right-handed 310
Helix 46	AF1	D	31	47	Right-handed alpha
Helix 47	AF2	D	53	79	Right-handed alpha
Helix 48	AF3	D	82	105	Right-handed alpha
Helix 49	AF4	D	105	120	Right-handed alpha
Helix 50	AF5	D	121	125	Right-handed 310
Helix 51	AF6	D	127	131	Right-handed 310
Helix 52	AF7	D	138	153	Right-handed alpha
Helix 53	AF8	D	154	169	Right-handed alpha
Helix 54	AF9	D	170	172	Right-handed 310
Helix 55	AG1	D	177	191	Right-handed alpha
Helix 56	AG2	D	200	207	Right-handed alpha
Helix 57	AG3	D	207	228	Right-handed alpha
Helix 58	AG4	D	231	254	Right-handed alpha
Helix 59	AG5	D	255	257	Right-handed 310
Helix 60	AG6	D	258	267	Right-handed alpha
Helix 61	AG7	D	274	288	Right-handed alpha
Helix 62	AG8	D	290	302	Right-handed alpha
Helix 63	AG9	D	306	331	Right-handed alpha
Helix 64	AH1	D	335	357	Right-handed alpha
Helix 65	AH2	D	361	377	Right-handed alpha
Helix 66	AH3	D	386	399	Right-handed alpha
Helix 67	AH4	D	407	423	Right-handed alpha
Helix 68	AH5	D	427	446	Right-handed alpha
Helix 69	AH6	D	450	465	Right-handed alpha
Helix 70	AH7	D	470	496	Right-handed alpha
Helix 71	AH8	D	530	532	Right-handed 310
Helix 72	AH9	D	533	548	Right-handed alpha
Helix 73	AI1	D	579	590	Right-handed alpha
Helix 74	AI2	D	597	603	Right-handed alpha
Helix 75	AI3	D	606	621	Right-handed alpha
Helix 76	AI4	D	661	692	Right-handed alpha
Helix 77	AI5	D	695	711	Right-handed alpha
Helix 78	AI6	D	714	728	Right-handed alpha
Helix 79	AI7	R	56	60	Right-handed 310
Helix 80	AI8	R	81	88	Right-handed alpha

There are 8 sheets in PDB entry 9BJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	42	43	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	109	111	parallel
Strand 3	A	140	142	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	241	243	parallel
Strand 3	A	270	272	parallel
Strand 4	A	296	298	parallel
Strand 5	A	317	319	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	73	75	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	12	14	anti-parallel
Strand 4	C	28	32	parallel
Strand 5	C	18	22	anti-parallel
Strand 6	C	59	61	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	566	first strand
Strand 2	D	573	578	anti-parallel
Strand 3	D	650	652	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	625	first strand
Strand 2	D	638	640	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	70	71	first strand
Strand 2	R	79	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJ8