Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BJE entry

There is 1 chain in PDB entry 9BJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18LEU 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9BJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
44 50Right-handed alpha
Helix 3
AA3
A
269 274Right-handed alpha
Helix 4
AA4
A
280 304Right-handed alpha
Helix 5
AA5
A
327 338Right-handed alpha
Helix 6
AA6
A
348 363Right-handed alpha
Helix 7
AA7
A
455 457Right-handed 310
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There are 5 sheets in PDB entry 9BJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
412 416parallel
Strand 3
A
440 453anti-parallel
Strand 4
A
259 268anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
412 416parallel
Strand 3
A
440 453anti-parallel
Strand 4
A
428 435anti-parallel
Strand 5
A
423 425anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
254 257anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
459 466parallel
Strand 3
A
397 403anti-parallel
Strand 4
A
344 347anti-parallel
Strand 5
A
382 386parallel
Strand 6
A
378 379anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
374 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il