Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BJH entry

There are 3 chains in PDB entry 9BJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 108	GLU 438
B	ASN 108	GLU 438
H	GLN 1	ARG 73

There are 37 helices in PDB entry 9BJH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	117	Right-handed 310
Helix 2	AA2	A	118	123	Right-handed alpha
Helix 3	AA3	A	195	202	Right-handed alpha
Helix 4	AA4	A	206	211	Right-handed alpha
Helix 5	AA5	A	212	223	Right-handed alpha
Helix 6	AA6	A	225	229	Right-handed 310
Helix 7	AA7	A	297	302	Right-handed alpha
Helix 8	AA8	A	333	345	Right-handed alpha
Helix 9	AA9	B	114	117	Right-handed 310
Helix 10	AB1	B	118	123	Right-handed alpha
Helix 11	AB2	B	195	202	Right-handed alpha
Helix 12	AB3	B	206	210	Right-handed 310
Helix 13	AB4	B	212	223	Right-handed alpha
Helix 14	AB5	B	224	229	Right-handed 310
Helix 15	AB6	B	282	285	Right-handed 310
Helix 16	AB7	B	297	302	Right-handed alpha
Helix 17	AB8	B	315	319	Right-handed 310
Helix 18	AB9	B	333	345	Right-handed alpha
Helix 19	AC1	B	387	391	Right-handed 310
Helix 20	AC2	H	60	64	Right-handed 310
Helix 21	AC3	H	86	90	Right-handed 310
Helix 22	AC4	H	102	106	Right-handed 310
Helix 23	AC5	H	164	166	Right-handed 310
Helix 24	AC6	H	195	197	Right-handed 310
Helix 25	AC7	I	86	90	Right-handed 310
Helix 26	AC8	I	102	106	Right-handed 310
Helix 27	AC9	I	164	166	Right-handed 310
Helix 28	AD1	I	195	197	Right-handed 310
Helix 29	AD2	I	209	212	Right-handed 310
Helix 30	AD3	L	30	32	Right-handed 310
Helix 31	AD4	L	80	84	Right-handed 310
Helix 32	AD5	L	122	127	Right-handed alpha
Helix 33	AD6	L	184	189	Right-handed alpha
Helix 34	AD7	M	30	32	Right-handed 310
Helix 35	AD8	M	80	84	Right-handed 310
Helix 36	AD9	M	122	128	Right-handed alpha
Helix 37	AE1	M	184	188	Right-handed alpha

There are 32 sheets in PDB entry 9BJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	140	144	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	238	241	anti-parallel
Strand 4	A	246	249	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	158	first strand
Strand 2	A	276	280	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	330	first strand
Strand 2	A	408	412	anti-parallel
Strand 3	A	399	403	anti-parallel
Strand 4	A	425	429	anti-parallel
Strand 5	A	306	308	anti-parallel
Strand 6	A	437	438	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	311	316	anti-parallel
Strand 3	A	418	420	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	140	144	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	238	241	anti-parallel
Strand 4	B	246	249	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	276	280	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	330	first strand
Strand 2	B	408	412	anti-parallel
Strand 3	B	399	403	anti-parallel
Strand 4	B	425	429	anti-parallel
Strand 5	B	306	308	anti-parallel
Strand 6	B	437	438	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	B	418	420	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	108	111	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	69	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	115	119	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	40	anti-parallel
Strand 5	I	44	52	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	115	119	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	108	111	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	143	153	anti-parallel
Strand 3	I	184	193	anti-parallel
Strand 4	I	171	173	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	143	153	anti-parallel
Strand 3	I	184	193	anti-parallel
Strand 4	I	177	178	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	162	first strand
Strand 2	I	203	208	anti-parallel
Strand 3	I	213	218	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	19	23	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	68	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	103	107	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	46	50	anti-parallel
Strand 6	M	54	55	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	103	107	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	98	99	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	119	first strand
Strand 2	M	130	140	anti-parallel
Strand 3	M	174	183	anti-parallel
Strand 4	M	160	164	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	154	155	first strand
Strand 2	M	145	151	anti-parallel
Strand 3	M	192	199	anti-parallel
Strand 4	M	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJH