Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BJI entry

There are 7 chains in PDB entry 9BJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 HIS 2HIS 25
A
 LEU 255ARG 856
B
 LEU 255ARG 856
C
 LEU 255LEU 854
D
 LEU 255SER 855
E
 LEU 255LEU 854
F
 LEU 255ARG 856
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are174 helices in PDB entry 9BJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
263 267Right-handed 310
Helix 2
AA2
A
270 285Right-handed alpha
Helix 3
AA3
A
286 293Right-handed alpha
Helix 4
AA4
A
310 323Right-handed alpha
Helix 5
AA5
A
332 334Right-handed 310
Helix 6
AA6
A
340 356Right-handed alpha
Helix 7
AA7
A
366 369Right-handed 310
Helix 8
AA8
A
378 395Right-handed alpha
Helix 9
AA9
A
412 416Right-handed 310
Helix 10
AB1
A
417 422Right-handed 310
Helix 11
AB2
A
436 449Right-handed alpha
Helix 12
AB3
A
458 465Right-handed alpha
Helix 13
AB4
A
470 497Right-handed alpha
Helix 14
AB5
A
523 537Right-handed alpha
Helix 15
AB6
A
544 549Right-handed 310
Helix 16
AB7
A
552 561Right-handed alpha
Helix 17
AB8
A
565 569Right-handed 310
Helix 18
AB9
A
579 583Right-handed 310
Helix 19
AC1
A
586 597Right-handed alpha
Helix 20
AC2
A
597 603Right-handed alpha
Helix 21
AC3
A
603 610Right-handed alpha
Helix 22
AC4
A
627 637Right-handed alpha
Helix 23
AC5
A
657 673Right-handed alpha
Helix 24
AC6
A
683 686Right-handed 310
Helix 25
AC7
A
695 711Right-handed alpha
Helix 26
AC8
A
712 714Right-handed 310
Helix 27
AC9
A
726 730Right-handed 310
Helix 28
AD1
A
731 736Right-handed 310
Helix 29
AD2
A
750 763Right-handed alpha
Helix 30
AD3
A
775 782Right-handed alpha
Helix 31
AD4
A
783 786Right-handed 310
Helix 32
AD5
A
789 812Right-handed alpha
Helix 33
AD6
A
824 835Right-handed alpha
Helix 34
AD7
A
840 856Right-handed alpha
Helix 35
AD8
B
263 267Right-handed 310
Helix 36
AD9
B
270 286Right-handed alpha
Helix 37
AE1
B
286 294Right-handed alpha
Helix 38
AE2
B
310 323Right-handed alpha
Helix 39
AE3
B
332 334Right-handed 310
Helix 40
AE4
B
340 356Right-handed alpha
Helix 41
AE5
B
366 369Right-handed 310
Helix 42
AE6
B
378 398Right-handed alpha
Helix 43
AE7
B
412 416Right-handed 310
Helix 44
AE8
B
436 449Right-handed alpha
Helix 45
AE9
B
458 465Right-handed alpha
Helix 46
AF1
B
470 497Right-handed alpha
Helix 47
AF2
B
523 537Right-handed alpha
Helix 48
AF3
B
552 560Right-handed alpha
Helix 49
AF4
B
566 570Right-handed 310
Helix 50
AF5
B
579 583Right-handed 310
Helix 51
AF6
B
586 597Right-handed alpha
Helix 52
AF7
B
597 603Right-handed alpha
Helix 53
AF8
B
603 610Right-handed alpha
Helix 54
AF9
B
627 637Right-handed alpha
Helix 55
AG1
B
649 652Right-handed 310
Helix 56
AG2
B
657 673Right-handed alpha
Helix 57
AG3
B
683 686Right-handed 310
Helix 58
AG4
B
695 710Right-handed alpha
Helix 59
AG5
B
726 730Right-handed 310
Helix 60
AG6
B
750 763Right-handed alpha
Helix 61
AG7
B
775 782Right-handed alpha
Helix 62
AG8
B
783 786Right-handed 310
Helix 63
AG9
B
789 813Right-handed alpha
Helix 64
AH1
B
824 835Right-handed alpha
Helix 65
AH2
B
840 856Right-handed alpha
Helix 66
AH3
C
263 267Right-handed 310
Helix 67
AH4
C
270 286Right-handed alpha
Helix 68
AH5
C
286 294Right-handed alpha
Helix 69
AH6
C
310 322Right-handed alpha
Helix 70
AH7
C
332 334Right-handed 310
Helix 71
AH8
C
340 356Right-handed alpha
Helix 72
AH9
C
366 369Right-handed 310
Helix 73
AI1
C
378 398Right-handed alpha
Helix 74
AI2
C
412 416Right-handed 310
Helix 75
AI3
C
436 448Right-handed alpha
Helix 76
AI4
C
459 465Right-handed alpha
Helix 77
AI5
C
470 496Right-handed alpha
Helix 78
AI6
C
523 537Right-handed alpha
Helix 79
AI7
C
552 560Right-handed alpha
Helix 80
AI8
C
565 569Right-handed 310
Helix 81
AI9
C
579 583Right-handed 310
Helix 82
AJ1
C
586 597Right-handed alpha
Helix 83
AJ2
C
597 603Right-handed alpha
Helix 84
AJ3
C
603 610Right-handed alpha
Helix 85
AJ4
C
627 637Right-handed alpha
Helix 86
AJ5
C
657 673Right-handed alpha
Helix 87
AJ6
C
682 687Right-handed alpha
Helix 88
AJ7
C
695 710Right-handed alpha
Helix 89
AJ8
C
726 730Right-handed 310
Helix 90
AJ9
C
750 763Right-handed alpha
Helix 91
AK1
C
775 782Right-handed alpha
Helix 92
AK2
C
783 786Right-handed 310
Helix 93
AK3
C
789 815Right-handed alpha
Helix 94
AK4
C
824 833Right-handed alpha
Helix 95
AK5
C
840 854Right-handed alpha
Helix 96
AK6
D
270 286Right-handed alpha
Helix 97
AK7
D
286 294Right-handed alpha
Helix 98
AK8
D
310 322Right-handed alpha
Helix 99
AK9
D
332 335Right-handed 310
Helix 100
AL1
D
340 356Right-handed alpha
Helix 101
AL2
D
366 369Right-handed 310
Helix 102
AL3
D
378 398Right-handed alpha
Helix 103
AL4
D
412 416Right-handed 310
Helix 104
AL5
D
436 448Right-handed alpha
Helix 105
AL6
D
459 465Right-handed alpha
Helix 106
AL7
D
470 497Right-handed alpha
Helix 107
AL8
D
523 536Right-handed alpha
Helix 108
AL9
D
552 563Right-handed alpha
Helix 109
AM1
D
566 570Right-handed 310
Helix 110
AM2
D
586 597Right-handed alpha
Helix 111
AM3
D
597 603Right-handed alpha
Helix 112
AM4
D
603 611Right-handed alpha
Helix 113
AM5
D
627 637Right-handed alpha
Helix 114
AM6
D
657 673Right-handed alpha
Helix 115
AM7
D
683 686Right-handed 310
Helix 116
AM8
D
695 710Right-handed alpha
Helix 117
AM9
D
750 763Right-handed alpha
Helix 118
AN1
D
775 782Right-handed alpha
Helix 119
AN2
D
783 786Right-handed 310
Helix 120
AN3
D
789 812Right-handed alpha
Helix 121
AN4
D
824 835Right-handed alpha
Helix 122
AN5
D
840 855Right-handed alpha
Helix 123
AN6
E
263 267Right-handed 310
Helix 124
AN7
E
271 286Right-handed alpha
Helix 125
AN8
E
286 294Right-handed alpha
Helix 126
AN9
E
310 323Right-handed alpha
Helix 127
AO1
E
331 335Right-handed alpha
Helix 128
AO2
E
340 356Right-handed alpha
Helix 129
AO3
E
366 369Right-handed 310
Helix 130
AO4
E
378 397Right-handed alpha
Helix 131
AO5
E
412 416Right-handed 310
Helix 132
AO6
E
417 421Right-handed 310
Helix 133
AO7
E
436 448Right-handed alpha
Helix 134
AO8
E
449 451Right-handed 310
Helix 135
AO9
E
458 466Right-handed alpha
Helix 136
AP1
E
470 497Right-handed alpha
Helix 137
AP2
E
529 535Right-handed alpha
Helix 138
AP3
E
543 547Right-handed 310
Helix 139
AP4
E
552 563Right-handed alpha
Helix 140
AP5
E
579 583Right-handed 310
Helix 141
AP6
E
586 597Right-handed alpha
Helix 142
AP7
E
597 603Right-handed alpha
Helix 143
AP8
E
603 610Right-handed alpha
Helix 144
AP9
E
627 640Right-handed alpha
Helix 145
AQ1
E
648 652Right-handed alpha
Helix 146
AQ2
E
657 673Right-handed alpha
Helix 147
AQ3
E
682 687Right-handed alpha
Helix 148
AQ4
E
695 710Right-handed alpha
Helix 149
AQ5
E
750 763Right-handed alpha
Helix 150
AQ6
E
775 781Right-handed alpha
Helix 151
AQ7
E
789 809Right-handed alpha
Helix 152
AQ8
E
824 835Right-handed alpha
Helix 153
AQ9
E
840 854Right-handed alpha
Helix 154
AR1
F
270 284Right-handed alpha
Helix 155
AR2
F
287 294Right-handed alpha
Helix 156
AR3
F
310 323Right-handed alpha
Helix 157
AR4
F
343 355Right-handed alpha
Helix 158
AR5
F
390 398Right-handed alpha
Helix 159
AR6
F
417 422Right-handed 310
Helix 160
AR7
F
436 448Right-handed alpha
Helix 161
AR8
F
459 466Right-handed alpha
Helix 162
AR9
F
470 497Right-handed alpha
Helix 163
AS1
F
523 537Right-handed alpha
Helix 164
AS2
F
552 563Right-handed alpha
Helix 165
AS3
F
587 599Right-handed alpha
Helix 166
AS4
F
625 639Right-handed alpha
Helix 167
AS5
F
661 672Right-handed alpha
Helix 168
AS6
F
682 687Right-handed alpha
Helix 169
AS7
F
699 709Right-handed alpha
Helix 170
AS8
F
750 762Right-handed alpha
Helix 171
AS9
F
775 781Right-handed alpha
Helix 172
AT1
F
790 813Right-handed alpha
Helix 173
AT2
F
824 835Right-handed alpha
Helix 174
AT3
F
840 856Right-handed alpha
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There are 12 sheets in PDB entry 9BJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
359 364parallel
Strand 3
A
404 410parallel
Strand 4
A
300 304parallel
Strand 5
A
428 431parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 647first strand
Strand 2
A
676 681parallel
Strand 3
A
718 724parallel
Strand 4
A
617 621parallel
Strand 5
A
742 745parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 330first strand
Strand 2
B
359 364parallel
Strand 3
B
404 410parallel
Strand 4
B
300 304parallel
Strand 5
B
428 431parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
642 647first strand
Strand 2
B
676 681parallel
Strand 3
B
718 724parallel
Strand 4
B
617 621parallel
Strand 5
B
742 745parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
326 330first strand
Strand 2
C
359 364parallel
Strand 3
C
404 410parallel
Strand 4
C
300 304parallel
Strand 5
C
428 431parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
642 647first strand
Strand 2
C
676 681parallel
Strand 3
C
718 724parallel
Strand 4
C
617 621parallel
Strand 5
C
742 745parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
326 330first strand
Strand 2
D
359 364parallel
Strand 3
D
404 410parallel
Strand 4
D
300 304parallel
Strand 5
D
428 431parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
642 647first strand
Strand 2
D
676 681parallel
Strand 3
D
718 724parallel
Strand 4
D
617 621parallel
Strand 5
D
742 745parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
326 330first strand
Strand 2
E
359 364parallel
Strand 3
E
404 410parallel
Strand 4
E
300 304parallel
Strand 5
E
428 431parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
642 647first strand
Strand 2
E
676 681parallel
Strand 3
E
718 724parallel
Strand 4
E
618 621parallel
Strand 5
E
742 745parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
359 363first strand
Strand 2
F
404 410parallel
Strand 3
F
300 304parallel
Strand 4
F
430 431parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
644 646first strand
Strand 2
F
676 681parallel
Strand 3
F
718 723parallel
Strand 4
F
618 621parallel
Strand 5
F
744 745parallel
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