Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BJL entry

There are 3 chains in PDB entry 9BJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	LYS 514
B	THR 8	PRO 509
C	THR 8	ASN 405

There are 88 helices in PDB entry 9BJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	34	Right-handed alpha
Helix 2	AA2	A	37	42	Right-handed alpha
Helix 3	AA3	A	43	58	Right-handed alpha
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	77	81	Right-handed alpha
Helix 6	AA6	A	104	116	Right-handed alpha
Helix 7	AA7	A	124	144	Right-handed alpha
Helix 8	AA8	A	156	163	Right-handed 310
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	176	180	Right-handed 310
Helix 11	AB2	A	181	195	Right-handed alpha
Helix 12	AB3	A	217	230	Right-handed alpha
Helix 13	AB4	A	233	241	Right-handed alpha
Helix 14	AB5	A	242	245	Right-handed 310
Helix 15	AB6	A	246	261	Right-handed alpha
Helix 16	AB7	A	275	289	Right-handed alpha
Helix 17	AB8	A	302	314	Right-handed alpha
Helix 18	AB9	A	334	348	Right-handed alpha
Helix 19	AC1	A	353	359	Right-handed alpha
Helix 20	AC2	A	367	371	Right-handed 310
Helix 21	AC3	A	430	442	Right-handed alpha
Helix 22	AC4	A	448	466	Right-handed alpha
Helix 23	AC5	A	467	469	Right-handed 310
Helix 24	AC6	B	9	34	Right-handed alpha
Helix 25	AC7	B	37	42	Right-handed alpha
Helix 26	AC8	B	43	59	Right-handed alpha
Helix 27	AC9	B	59	64	Right-handed alpha
Helix 28	AD1	B	104	116	Right-handed alpha
Helix 29	AD2	B	124	144	Right-handed alpha
Helix 30	AD3	B	156	163	Right-handed 310
Helix 31	AD4	B	169	173	Right-handed 310
Helix 32	AD5	B	176	180	Right-handed 310
Helix 33	AD6	B	181	199	Right-handed alpha
Helix 34	AD7	B	217	230	Right-handed alpha
Helix 35	AD8	B	233	241	Right-handed alpha
Helix 36	AD9	B	242	245	Right-handed 310
Helix 37	AE1	B	246	261	Right-handed alpha
Helix 38	AE2	B	275	289	Right-handed alpha
Helix 39	AE3	B	294	299	Right-handed alpha
Helix 40	AE4	B	303	314	Right-handed alpha
Helix 41	AE5	B	334	348	Right-handed alpha
Helix 42	AE6	B	353	359	Right-handed alpha
Helix 43	AE7	B	367	371	Right-handed 310
Helix 44	AE8	B	430	442	Right-handed alpha
Helix 45	AE9	B	448	466	Right-handed alpha
Helix 46	AF1	B	467	469	Right-handed 310
Helix 47	AF2	C	9	34	Right-handed alpha
Helix 48	AF3	C	38	42	Right-handed 310
Helix 49	AF4	C	43	58	Right-handed alpha
Helix 50	AF5	C	103	115	Right-handed alpha
Helix 51	AF6	C	124	144	Right-handed alpha
Helix 52	AF7	C	156	163	Right-handed 310
Helix 53	AF8	C	169	173	Right-handed 310
Helix 54	AF9	C	176	180	Right-handed 310
Helix 55	AG1	C	181	197	Right-handed alpha
Helix 56	AG2	C	217	230	Right-handed alpha
Helix 57	AG3	C	233	241	Right-handed alpha
Helix 58	AG4	C	242	245	Right-handed 310
Helix 59	AG5	C	246	261	Right-handed alpha
Helix 60	AG6	C	275	289	Right-handed alpha
Helix 61	AG7	C	294	299	Right-handed alpha
Helix 62	AG8	C	303	314	Right-handed alpha
Helix 63	AG9	C	334	348	Right-handed alpha
Helix 64	AH1	C	353	359	Right-handed alpha
Helix 65	AH2	C	367	371	Right-handed 310
Helix 66	AH3	C	430	442	Right-handed alpha
Helix 67	AH4	C	448	465	Right-handed alpha
Helix 68	AH5	C	466	469	Right-handed 310
Helix 69	AH6	D	9	34	Right-handed alpha
Helix 70	AH7	D	38	42	Right-handed 310
Helix 71	AH8	D	43	58	Right-handed alpha
Helix 72	AH9	D	104	116	Right-handed alpha
Helix 73	AI1	D	124	144	Right-handed alpha
Helix 74	AI2	D	156	163	Right-handed 310
Helix 75	AI3	D	169	173	Right-handed 310
Helix 76	AI4	D	176	180	Right-handed 310
Helix 77	AI5	D	181	196	Right-handed alpha
Helix 78	AI6	D	217	230	Right-handed alpha
Helix 79	AI7	D	233	241	Right-handed alpha
Helix 80	AI8	D	242	245	Right-handed 310
Helix 81	AI9	D	246	261	Right-handed alpha
Helix 82	AJ1	D	275	289	Right-handed alpha
Helix 83	AJ2	D	303	314	Right-handed alpha
Helix 84	AJ3	D	334	348	Right-handed alpha
Helix 85	AJ4	D	353	359	Right-handed alpha
Helix 86	AJ5	D	367	371	Right-handed 310
Helix 87	AJ6	D	430	442	Right-handed alpha
Helix 88	AJ7	D	448	467	Right-handed alpha

There are 12 sheets in PDB entry 9BJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	94	103	anti-parallel
Strand 3	A	381	386	anti-parallel
Strand 4	A	318	322	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	479	480	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	B	471	472	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	D	425	426	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	91	first strand
Strand 2	B	94	103	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	479	480	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	C	471	472	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	91	first strand
Strand 2	C	94	102	anti-parallel
Strand 3	C	381	386	anti-parallel
Strand 4	C	318	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	479	480	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	D	471	472	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	90	first strand
Strand 2	D	95	103	anti-parallel
Strand 3	D	381	386	anti-parallel
Strand 4	D	318	322	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	395	first strand
Strand 2	D	479	480	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJL