Analysis of interatomic Contacts of Structural Units in PDB entry:
9BJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BJX entry

There are 4 chains in PDB entry 9BJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38LYS 405
B
 SER 38LYS 405
C
 ASN 39GLY 404
D
 ASN 39LEU 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9BJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 47Right-handed alpha
Helix 2
AA2
A
77 84Right-handed 310
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
112 114Right-handed 310
Helix 5
AA5
A
125 142Right-handed alpha
Helix 6
AA6
A
153 158Right-handed alpha
Helix 7
AA7
A
161 163Right-handed 310
Helix 8
AA8
A
164 183Right-handed alpha
Helix 9
AA9
A
208 229Right-handed alpha
Helix 10
AB1
A
230 235Right-handed 310
Helix 11
AB2
A
243 250Right-handed 310
Helix 12
AB3
A
279 284Right-handed alpha
Helix 13
AB4
A
292 296Right-handed 310
Helix 14
AB5
A
305 320Right-handed alpha
Helix 15
AB6
A
321 324Right-handed 310
Helix 16
AB7
A
341 363Right-handed alpha
Helix 17
AB8
A
395 404Right-handed alpha
Helix 18
AB9
B
41 47Right-handed alpha
Helix 19
AC1
B
77 84Right-handed 310
Helix 20
AC2
B
91 102Right-handed alpha
Helix 21
AC3
B
125 142Right-handed alpha
Helix 22
AC4
B
153 158Right-handed alpha
Helix 23
AC5
B
161 183Right-handed alpha
Helix 24
AC6
B
208 229Right-handed alpha
Helix 25
AC7
B
230 234Right-handed 310
Helix 26
AC8
B
243 250Right-handed 310
Helix 27
AC9
B
279 284Right-handed alpha
Helix 28
AD1
B
292 296Right-handed 310
Helix 29
AD2
B
305 320Right-handed alpha
Helix 30
AD3
B
321 324Right-handed 310
Helix 31
AD4
B
341 363Right-handed alpha
Helix 32
AD5
B
395 404Right-handed alpha
Helix 33
AD6
C
41 47Right-handed alpha
Helix 34
AD7
C
77 84Right-handed 310
Helix 35
AD8
C
91 102Right-handed alpha
Helix 36
AD9
C
112 114Right-handed 310
Helix 37
AE1
C
125 142Right-handed alpha
Helix 38
AE2
C
153 158Right-handed alpha
Helix 39
AE3
C
161 183Right-handed alpha
Helix 40
AE4
C
208 229Right-handed alpha
Helix 41
AE5
C
230 235Right-handed 310
Helix 42
AE6
C
243 250Right-handed 310
Helix 43
AE7
C
279 284Right-handed alpha
Helix 44
AE8
C
292 296Right-handed 310
Helix 45
AE9
C
305 320Right-handed alpha
Helix 46
AF1
C
321 324Right-handed 310
Helix 47
AF2
C
341 363Right-handed alpha
Helix 48
AF3
C
395 404Right-handed alpha
Helix 49
AF4
D
41 47Right-handed alpha
Helix 50
AF5
D
77 84Right-handed 310
Helix 51
AF6
D
91 102Right-handed alpha
Helix 52
AF7
D
125 142Right-handed alpha
Helix 53
AF8
D
153 158Right-handed alpha
Helix 54
AF9
D
161 183Right-handed alpha
Helix 55
AG1
D
208 230Right-handed alpha
Helix 56
AG2
D
231 235Right-handed 310
Helix 57
AG3
D
243 250Right-handed 310
Helix 58
AG4
D
279 284Right-handed alpha
Helix 59
AG5
D
292 296Right-handed 310
Helix 60
AG6
D
305 320Right-handed alpha
Helix 61
AG7
D
321 324Right-handed 310
Helix 62
AG8
D
341 363Right-handed alpha
Helix 63
AG9
D
395 404Right-handed alpha
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There are 8 sheets in PDB entry 9BJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
105 108parallel
Strand 3
A
145 148parallel
Strand 4
A
190 193parallel
Strand 5
A
238 241parallel
Strand 6
A
270 275parallel
Strand 7
A
326 332parallel
Strand 8
A
366 369parallel
Strand 9
A
50 53parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
123 124anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
105 108parallel
Strand 3
B
145 148parallel
Strand 4
B
190 193parallel
Strand 5
B
238 241parallel
Strand 6
B
270 275parallel
Strand 7
B
326 332parallel
Strand 8
B
366 369parallel
Strand 9
B
50 53parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
123 124anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
105 108parallel
Strand 3
C
145 149parallel
Strand 4
C
190 193parallel
Strand 5
C
238 241parallel
Strand 6
C
270 275parallel
Strand 7
C
326 332parallel
Strand 8
C
366 369parallel
Strand 9
C
50 53parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 118first strand
Strand 2
C
123 124anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
105 108parallel
Strand 3
D
145 148parallel
Strand 4
D
190 193parallel
Strand 5
D
238 241parallel
Strand 6
D
270 275parallel
Strand 7
D
326 332parallel
Strand 8
D
366 369parallel
Strand 9
D
50 53parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 118first strand
Strand 2
D
123 124anti-parallel
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