Analysis of interatomic Contacts of Structural Units in PDB entry:
9BK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BK9 entry

There are 6 chains in PDB entry 9BK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 14	ARG 143
B	PRO 5	ARG 143
C	TYR 15	PRO 144
D	TYR 15	PRO 144
E	ALA 14	PRO 144
F	ALA 14	ARG 143

There are 30 helices in PDB entry 9BK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	73	Right-handed alpha
Helix 2	AA2	A	74	76	Right-handed 310
Helix 3	AA3	A	96	113	Right-handed alpha
Helix 4	AA4	A	114	117	Right-handed 310
Helix 5	AA5	A	128	132	Right-handed 310
Helix 6	AA6	B	6	11	Right-handed alpha
Helix 7	AA7	B	49	73	Right-handed alpha
Helix 8	AA8	B	74	76	Right-handed 310
Helix 9	AA9	B	96	113	Right-handed alpha
Helix 10	AB1	B	114	117	Right-handed 310
Helix 11	AB2	B	128	132	Right-handed 310
Helix 12	AB3	C	49	73	Right-handed alpha
Helix 13	AB4	C	74	76	Right-handed 310
Helix 14	AB5	C	96	113	Right-handed alpha
Helix 15	AB6	C	114	117	Right-handed 310
Helix 16	AB7	C	128	132	Right-handed 310
Helix 17	AB8	D	49	73	Right-handed alpha
Helix 18	AB9	D	74	76	Right-handed 310
Helix 19	AC1	D	96	113	Right-handed alpha
Helix 20	AC2	D	114	117	Right-handed 310
Helix 21	AC3	D	128	132	Right-handed 310
Helix 22	AC4	E	49	73	Right-handed alpha
Helix 23	AC5	E	74	76	Right-handed 310
Helix 24	AC6	E	96	113	Right-handed alpha
Helix 25	AC7	E	114	117	Right-handed 310
Helix 26	AC8	E	128	132	Right-handed 310
Helix 27	AC9	F	49	73	Right-handed alpha
Helix 28	AD1	F	74	76	Right-handed 310
Helix 29	AD2	F	96	113	Right-handed alpha
Helix 30	AD3	F	128	132	Right-handed 310

There are 12 sheets in PDB entry 9BK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	134	142	anti-parallel
Strand 4	A	78	89	anti-parallel
Strand 5	A	119	125	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	37	38	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	24	30	anti-parallel
Strand 3	B	134	142	anti-parallel
Strand 4	B	78	89	anti-parallel
Strand 5	B	119	125	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	37	38	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	24	30	anti-parallel
Strand 3	C	134	142	anti-parallel
Strand 4	C	78	89	anti-parallel
Strand 5	C	119	125	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	37	38	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	24	30	anti-parallel
Strand 3	D	134	142	anti-parallel
Strand 4	D	78	89	anti-parallel
Strand 5	D	119	125	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	37	38	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	21	first strand
Strand 2	E	24	30	anti-parallel
Strand 3	E	134	142	anti-parallel
Strand 4	E	78	89	anti-parallel
Strand 5	E	119	125	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	37	38	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	21	first strand
Strand 2	F	24	30	anti-parallel
Strand 3	F	134	142	anti-parallel
Strand 4	F	78	89	anti-parallel
Strand 5	F	119	125	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	37	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BK9