Analysis of interatomic Contacts of Structural Units in PDB entry:
9BKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BKC entry

There are 6 chains in PDB entry 9BKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 38ARG 165
B
 GLN 38ARG 165
C
 SER 39ALA 164
D
 SER 39ALA 164
E
 SER 39ALA 164
F
 GLN 38ALA 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9BKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 92Right-handed alpha
Helix 2
AA2
A
95 97Right-handed 310
Helix 3
AA3
A
109 113Right-handed 310
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
B
73 91Right-handed alpha
Helix 6
AA6
B
95 97Right-handed 310
Helix 7
AA7
B
109 113Right-handed 310
Helix 8
AA8
B
117 129Right-handed alpha
Helix 9
AA9
C
73 91Right-handed alpha
Helix 10
AB1
C
95 97Right-handed 310
Helix 11
AB2
C
109 113Right-handed 310
Helix 12
AB3
C
117 129Right-handed alpha
Helix 13
AB4
D
73 92Right-handed alpha
Helix 14
AB5
D
95 97Right-handed 310
Helix 15
AB6
D
109 113Right-handed 310
Helix 16
AB7
D
117 129Right-handed alpha
Helix 17
AB8
E
73 91Right-handed alpha
Helix 18
AB9
E
95 97Right-handed 310
Helix 19
AC1
E
109 113Right-handed 310
Helix 20
AC2
E
117 129Right-handed alpha
Helix 21
AC3
F
73 91Right-handed alpha
Helix 22
AC4
F
95 97Right-handed 310
Helix 23
AC5
F
109 113Right-handed 310
Helix 24
AC6
F
117 129Right-handed alpha
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There are 6 sheets in PDB entry 9BKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
99 107anti-parallel
Strand 5
B
139 145parallel
Strand 6
C
147 148anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
99 106parallel
Strand 3
A
155 163anti-parallel
Strand 4
A
47 50anti-parallel
Strand 5
C
40 42anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
C
47 51anti-parallel
Strand 3
C
155 163anti-parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
139 144parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 50first strand
Strand 2
D
155 162anti-parallel
Strand 3
D
99 106anti-parallel
Strand 4
D
139 144parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
139 145first strand
Strand 2
E
99 107parallel
Strand 3
E
155 163anti-parallel
Strand 4
E
47 51anti-parallel
Strand 5
F
39 42anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 148first strand
Strand 2
F
139 145anti-parallel
Strand 3
F
99 107parallel
Strand 4
F
155 163anti-parallel
Strand 5
F
47 50anti-parallel
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