Analysis of interatomic Contacts of Structural Units in PDB entry:
9BKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BKE entry

There are 2 chains in PDB entry 9BKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8LYS 527
B
 LYS 9LEU 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9BKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed 310
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
68 75Right-handed alpha
Helix 5
AA5
A
90 92Right-handed 310
Helix 6
AA6
A
96 113Right-handed alpha
Helix 7
AA7
A
122 135Right-handed alpha
Helix 8
AA8
A
136 141Right-handed 310
Helix 9
AA9
A
142 157Right-handed alpha
Helix 10
AB1
A
205 208Right-handed 310
Helix 11
AB2
A
224 227Right-handed 310
Helix 12
AB3
A
247 256Right-handed alpha
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
282 284Right-handed 310
Helix 15
AB6
A
291 302Right-handed alpha
Helix 16
AB7
A
303 306Right-handed 310
Helix 17
AB8
A
307 335Right-handed alpha
Helix 18
AB9
A
336 338Right-handed 310
Helix 19
AC1
A
339 366Right-handed alpha
Helix 20
AC2
A
378 404Right-handed alpha
Helix 21
AC3
A
405 409Right-handed 310
Helix 22
AC4
A
414 419Right-handed alpha
Helix 23
AC5
A
420 431Right-handed alpha
Helix 24
AC6
A
438 454Right-handed alpha
Helix 25
AC7
A
455 467Right-handed alpha
Helix 26
AC8
A
471 486Right-handed alpha
Helix 27
AC9
A
487 502Right-handed alpha
Helix 28
AD1
A
521 527Right-handed alpha
Helix 29
AD2
B
9 14Right-handed 310
Helix 30
AD3
B
22 31Right-handed alpha
Helix 31
AD4
B
52 66Right-handed alpha
Helix 32
AD5
B
68 75Right-handed alpha
Helix 33
AD6
B
90 92Right-handed 310
Helix 34
AD7
B
96 113Right-handed alpha
Helix 35
AD8
B
122 135Right-handed alpha
Helix 36
AD9
B
136 141Right-handed 310
Helix 37
AE1
B
142 157Right-handed alpha
Helix 38
AE2
B
178 182Right-handed 310
Helix 39
AE3
B
205 208Right-handed 310
Helix 40
AE4
B
224 227Right-handed 310
Helix 41
AE5
B
247 256Right-handed alpha
Helix 42
AE6
B
282 284Right-handed 310
Helix 43
AE7
B
291 302Right-handed alpha
Helix 44
AE8
B
303 306Right-handed 310
Helix 45
AE9
B
307 335Right-handed alpha
Helix 46
AF1
B
336 338Right-handed 310
Helix 47
AF2
B
339 366Right-handed alpha
Helix 48
AF3
B
378 404Right-handed alpha
Helix 49
AF4
B
405 409Right-handed 310
Helix 50
AF5
B
414 419Right-handed alpha
Helix 51
AF6
B
420 431Right-handed alpha
Helix 52
AF7
B
438 454Right-handed alpha
Helix 53
AF8
B
455 468Right-handed alpha
Helix 54
AF9
B
471 486Right-handed alpha
Helix 55
AG1
B
487 502Right-handed alpha
Helix 56
AG2
B
521 526Right-handed alpha
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There are 10 sheets in PDB entry 9BKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
240 243parallel
Strand 4
A
271 281anti-parallel
Strand 5
A
192 203anti-parallel
Strand 6
A
184 189anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
86 88anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
210 213parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
286 289anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
375 376anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
507 508anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
240 243parallel
Strand 4
B
271 281anti-parallel
Strand 5
B
192 203anti-parallel
Strand 6
B
184 189anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
86 88anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
210 214parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
286 289anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
375 376anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 504first strand
Strand 2
B
507 508anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il