Analysis of interatomic Contacts of Structural Units in PDB entry:
9BKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BKV entry

There are 2 chains in PDB entry 9BKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 20	ILE 807
B	GLY 20	ILE 807

There are 56 helices in PDB entry 9BKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	29	Right-handed alpha
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	64	69	Right-handed 310
Helix 5	AA5	A	70	77	Right-handed 310
Helix 6	AA6	A	78	88	Right-handed alpha
Helix 7	AA7	A	133	152	Right-handed alpha
Helix 8	AA8	A	170	175	Right-handed alpha
Helix 9	AA9	A	188	193	Right-handed alpha
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	A	257	276	Right-handed alpha
Helix 12	AB3	A	278	294	Right-handed alpha
Helix 13	AB4	A	352	382	Right-handed alpha
Helix 14	AB5	A	394	408	Right-handed alpha
Helix 15	AB6	A	421	430	Right-handed alpha
Helix 16	AB7	A	430	447	Right-handed alpha
Helix 17	AB8	A	471	485	Right-handed alpha
Helix 18	AB9	A	512	530	Right-handed alpha
Helix 19	AC1	A	539	563	Right-handed alpha
Helix 20	AC2	A	598	610	Right-handed alpha
Helix 21	AC3	A	611	631	Right-handed alpha
Helix 22	AC4	A	653	665	Right-handed alpha
Helix 23	AC5	A	688	698	Right-handed alpha
Helix 24	AC6	A	710	720	Right-handed alpha
Helix 25	AC7	A	728	733	Right-handed alpha
Helix 26	AC8	A	739	756	Right-handed alpha
Helix 27	AC9	A	766	776	Right-handed alpha
Helix 28	AD1	A	795	800	Right-handed alpha
Helix 29	AD2	B	21	29	Right-handed alpha
Helix 30	AD3	B	46	54	Right-handed alpha
Helix 31	AD4	B	56	61	Right-handed alpha
Helix 32	AD5	B	75	88	Right-handed alpha
Helix 33	AD6	B	134	149	Right-handed alpha
Helix 34	AD7	B	170	178	Right-handed alpha
Helix 35	AD8	B	180	185	Right-handed alpha
Helix 36	AD9	B	188	193	Right-handed alpha
Helix 37	AE1	B	200	212	Right-handed alpha
Helix 38	AE2	B	258	274	Right-handed alpha
Helix 39	AE3	B	278	294	Right-handed alpha
Helix 40	AE4	B	352	378	Right-handed alpha
Helix 41	AE5	B	394	407	Right-handed alpha
Helix 42	AE6	B	422	430	Right-handed alpha
Helix 43	AE7	B	430	448	Right-handed alpha
Helix 44	AE8	B	471	486	Right-handed alpha
Helix 45	AE9	B	512	531	Right-handed alpha
Helix 46	AF1	B	539	562	Right-handed alpha
Helix 47	AF2	B	598	610	Right-handed alpha
Helix 48	AF3	B	611	634	Right-handed alpha
Helix 49	AF4	B	653	665	Right-handed alpha
Helix 50	AF5	B	678	683	Right-handed alpha
Helix 51	AF6	B	686	699	Right-handed alpha
Helix 52	AF7	B	709	720	Right-handed alpha
Helix 53	AF8	B	728	733	Right-handed alpha
Helix 54	AF9	B	738	755	Right-handed alpha
Helix 55	AG1	B	766	776	Right-handed alpha
Helix 56	AG2	B	794	802	Right-handed alpha

There are 16 sheets in PDB entry 9BKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	108	120	anti-parallel
Strand 4	A	99	102	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	249	252	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	229	233	anti-parallel
Strand 3	A	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	314	first strand
Strand 2	A	297	305	anti-parallel
Strand 3	A	338	347	anti-parallel
Strand 4	A	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	314	first strand
Strand 2	A	297	305	anti-parallel
Strand 3	A	338	347	anti-parallel
Strand 4	A	328	332	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	459	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	501	506	anti-parallel
Strand 5	A	534	537	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	580	591	anti-parallel
Strand 3	A	566	574	anti-parallel
Strand 4	A	790	791	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	580	591	anti-parallel
Strand 3	A	640	643	parallel
Strand 4	A	672	675	parallel
Strand 5	A	701	704	parallel
Strand 6	A	724	727	parallel
Strand 7	A	758	762	parallel
Strand 8	A	780	782	parallel
Strand 9	A	566	574	anti-parallel
Strand 10	A	790	791	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	123	131	anti-parallel
Strand 4	B	108	120	anti-parallel
Strand 5	B	99	102	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	246	255	anti-parallel
Strand 4	B	229	240	anti-parallel
Strand 5	B	216	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	314	first strand
Strand 2	B	297	305	anti-parallel
Strand 3	B	338	347	anti-parallel
Strand 4	B	324	332	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	463	467	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	500	506	anti-parallel
Strand 5	B	534	537	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	640	643	parallel
Strand 4	B	672	675	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	580	591	anti-parallel
Strand 3	B	566	574	anti-parallel
Strand 4	B	780	783	anti-parallel
Strand 5	B	758	764	parallel
Strand 6	B	724	727	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BKV