Analysis of interatomic Contacts of Structural Units in PDB entry:
9BMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BMK entry

There are 2 chains in PDB entry 9BMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38PHE 403
B
 SER 38PHE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9BMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 47Right-handed alpha
Helix 2
AA2
A
77 84Right-handed 310
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
112 114Right-handed 310
Helix 5
AA5
A
125 142Right-handed alpha
Helix 6
AA6
A
153 158Right-handed alpha
Helix 7
AA7
A
161 183Right-handed alpha
Helix 8
AA8
A
208 228Right-handed alpha
Helix 9
AA9
A
229 234Right-handed 310
Helix 10
AB1
A
243 246Right-handed 310
Helix 11
AB2
A
247 252Right-handed alpha
Helix 12
AB3
A
292 296Right-handed 310
Helix 13
AB4
A
305 320Right-handed alpha
Helix 14
AB5
A
321 324Right-handed 310
Helix 15
AB6
A
341 362Right-handed alpha
Helix 16
AB7
A
395 402Right-handed alpha
Helix 17
AB8
B
41 47Right-handed alpha
Helix 18
AB9
B
77 84Right-handed 310
Helix 19
AC1
B
91 102Right-handed alpha
Helix 20
AC2
B
125 142Right-handed alpha
Helix 21
AC3
B
153 158Right-handed alpha
Helix 22
AC4
B
161 183Right-handed alpha
Helix 23
AC5
B
208 229Right-handed alpha
Helix 24
AC6
B
230 234Right-handed 310
Helix 25
AC7
B
243 250Right-handed 310
Helix 26
AC8
B
279 284Right-handed alpha
Helix 27
AC9
B
292 296Right-handed 310
Helix 28
AD1
B
305 320Right-handed alpha
Helix 29
AD2
B
321 324Right-handed 310
Helix 30
AD3
B
341 363Right-handed alpha
Helix 31
AD4
B
395 403Right-handed alpha
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There are 4 sheets in PDB entry 9BMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
105 108parallel
Strand 3
A
145 148parallel
Strand 4
A
190 193parallel
Strand 5
A
238 241parallel
Strand 6
A
270 275parallel
Strand 7
A
326 332parallel
Strand 8
A
366 369parallel
Strand 9
A
50 53parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
123 124anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
105 108parallel
Strand 3
B
145 148parallel
Strand 4
B
190 193parallel
Strand 5
B
238 241parallel
Strand 6
B
270 275parallel
Strand 7
B
326 332parallel
Strand 8
B
366 369parallel
Strand 9
B
50 53parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
123 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il