Analysis of interatomic Contacts of Structural Units in PDB entry:
9BML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BML entry

There is 1 chain in PDB entry 9BML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1457THR 4645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are137 helices in PDB entry 9BML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1457 1473Right-handed alpha
Helix 2
AA2
A
1489 1510Right-handed alpha
Helix 3
AA3
A
1511 1515Right-handed 310
Helix 4
AA4
A
1516 1554Right-handed alpha
Helix 5
AA5
A
1555 1561Right-handed alpha
Helix 6
AA6
A
1561 1585Right-handed alpha
Helix 7
AA7
A
1587 1593Right-handed alpha
Helix 8
AA8
A
1596 1613Right-handed alpha
Helix 9
AA9
A
1615 1626Right-handed alpha
Helix 10
AB1
A
1627 1632Right-handed 310
Helix 11
AB2
A
1633 1643Right-handed alpha
Helix 12
AB3
A
1646 1654Right-handed 310
Helix 13
AB4
A
1697 1728Right-handed alpha
Helix 14
AB5
A
1734 1745Right-handed alpha
Helix 15
AB6
A
1746 1769Right-handed alpha
Helix 16
AB7
A
1770 1772Right-handed 310
Helix 17
AB8
A
1777 1797Right-handed alpha
Helix 18
AB9
A
1801 1828Right-handed alpha
Helix 19
AC1
A
1835 1840Right-handed alpha
Helix 20
AC2
A
1852 1855Right-handed 310
Helix 21
AC3
A
1882 1898Right-handed alpha
Helix 22
AC4
A
1912 1923Right-handed alpha
Helix 23
AC5
A
1937 1952Right-handed alpha
Helix 24
AC6
A
1960 1963Right-handed 310
Helix 25
AC7
A
1964 1987Right-handed alpha
Helix 26
AC8
A
2029 2034Right-handed alpha
Helix 27
AC9
A
2045 2057Right-handed alpha
Helix 28
AD1
A
2061 2080Right-handed alpha
Helix 29
AD2
A
2089 2118Right-handed alpha
Helix 30
AD3
A
2123 2130Right-handed alpha
Helix 31
AD4
A
2132 2146Right-handed alpha
Helix 32
AD5
A
2147 2149Right-handed 310
Helix 33
AD6
A
2153 2165Right-handed alpha
Helix 34
AD7
A
2175 2189Right-handed alpha
Helix 35
AD8
A
2200 2217Right-handed alpha
Helix 36
AD9
A
2229 2246Right-handed alpha
Helix 37
AE1
A
2255 2259Right-handed 310
Helix 38
AE2
A
2260 2265Right-handed alpha
Helix 39
AE3
A
2279 2290Right-handed alpha
Helix 40
AE4
A
2293 2297Right-handed 310
Helix 41
AE5
A
2308 2313Right-handed alpha
Helix 42
AE6
A
2315 2320Right-handed alpha
Helix 43
AE7
A
2352 2359Right-handed alpha
Helix 44
AE8
A
2370 2385Right-handed alpha
Helix 45
AE9
A
2411 2424Right-handed alpha
Helix 46
AF1
A
2431 2441Right-handed alpha
Helix 47
AF2
A
2450 2476Right-handed alpha
Helix 48
AF3
A
2482 2503Right-handed alpha
Helix 49
AF4
A
2507 2522Right-handed alpha
Helix 50
AF5
A
2533 2535Right-handed 310
Helix 51
AF6
A
2549 2552Right-handed 310
Helix 52
AF7
A
2558 2562Right-handed 310
Helix 53
AF8
A
2571 2587Right-handed alpha
Helix 54
AF9
A
2600 2610Right-handed alpha
Helix 55
AG1
A
2627 2638Right-handed alpha
Helix 56
AG2
A
2677 2689Right-handed alpha
Helix 57
AG3
A
2724 2729Right-handed alpha
Helix 58
AG4
A
2740 2756Right-handed alpha
Helix 59
AG5
A
2757 2758Right-handed 310
Helix 60
AG6
A
2759 2764Right-handed 310
Helix 61
AG7
A
2765 2784Right-handed alpha
Helix 62
AG8
A
2795 2811Right-handed alpha
Helix 63
AG9
A
2817 2834Right-handed alpha
Helix 64
AH1
A
2839 2858Right-handed alpha
Helix 65
AH2
A
2862 2867Right-handed alpha
Helix 66
AH3
A
2885 2904Right-handed alpha
Helix 67
AH4
A
2912 2927Right-handed alpha
Helix 68
AH5
A
2942 2954Right-handed alpha
Helix 69
AH6
A
2968 2985Right-handed alpha
Helix 70
AH7
A
2997 2999Right-handed 310
Helix 71
AH8
A
3001 3015Right-handed alpha
Helix 72
AH9
A
3023 3041Right-handed alpha
Helix 73
AI1
A
3046 3061Right-handed alpha
Helix 74
AI2
A
3071 3082Right-handed alpha
Helix 75
AI3
A
3083 3086Right-handed 310
Helix 76
AI4
A
3098 3110Right-handed alpha
Helix 77
AI5
A
3138 3165Right-handed alpha
Helix 78
AI6
A
3172 3241Right-handed alpha
Helix 79
AI7
A
3450 3495Right-handed alpha
Helix 80
AI8
A
3495 3517Right-handed alpha
Helix 81
AI9
A
3521 3539Right-handed alpha
Helix 82
AJ1
A
3548 3554Right-handed alpha
Helix 83
AJ2
A
3555 3565Right-handed alpha
Helix 84
AJ3
A
3570 3582Right-handed alpha
Helix 85
AJ4
A
3594 3604Right-handed alpha
Helix 86
AJ5
A
3605 3608Right-handed 310
Helix 87
AJ6
A
3618 3630Right-handed alpha
Helix 88
AJ7
A
3638 3641Right-handed 310
Helix 89
AJ8
A
3642 3644Right-handed 310
Helix 90
AJ9
A
3645 3651Right-handed alpha
Helix 91
AK1
A
3689 3696Right-handed alpha
Helix 92
AK2
A
3704 3721Right-handed alpha
Helix 93
AK3
A
3721 3756Right-handed alpha
Helix 94
AK4
A
3759 3762Right-handed 310
Helix 95
AK5
A
3763 3817Right-handed alpha
Helix 96
AK6
A
3818 3821Right-handed 310
Helix 97
AK7
A
3828 3842Right-handed alpha
Helix 98
AK8
A
3843 3847Right-handed 310
Helix 99
AK9
A
3851 3873Right-handed alpha
Helix 100
AL1
A
3876 3894Right-handed alpha
Helix 101
AL2
A
3901 3911Right-handed alpha
Helix 102
AL3
A
3917 3921Right-handed 310
Helix 103
AL4
A
3928 3939Right-handed alpha
Helix 104
AL5
A
3940 3945Right-handed 310
Helix 105
AL6
A
3946 3954Right-handed alpha
Helix 106
AL7
A
3956 3962Right-handed alpha
Helix 107
AL8
A
3965 3970Right-handed 310
Helix 108
AL9
A
3981 3997Right-handed alpha
Helix 109
AM1
A
4000 4014Right-handed alpha
Helix 110
AM2
A
4015 4023Right-handed 310
Helix 111
AM3
A
4026 4034Right-handed alpha
Helix 112
AM4
A
4051 4063Right-handed alpha
Helix 113
AM5
A
4073 4091Right-handed alpha
Helix 114
AM6
A
4099 4101Right-handed 310
Helix 115
AM7
A
4102 4115Right-handed alpha
Helix 116
AM8
A
4135 4142Right-handed alpha
Helix 117
AM9
A
4152 4164Right-handed alpha
Helix 118
AN1
A
4165 4170Right-handed alpha
Helix 119
AN2
A
4175 4194Right-handed alpha
Helix 120
AN3
A
4196 4201Right-handed alpha
Helix 121
AN4
A
4208 4227Right-handed alpha
Helix 122
AN5
A
4234 4238Right-handed 310
Helix 123
AN6
A
4239 4250Right-handed alpha
Helix 124
AN7
A
4258 4273Right-handed alpha
Helix 125
AN8
A
4274 4279Right-handed 310
Helix 126
AN9
A
4301 4311Right-handed alpha
Helix 127
AO1
A
4317 4322Right-handed 310
Helix 128
AO2
A
4328 4346Right-handed alpha
Helix 129
AO3
A
4375 4391Right-handed alpha
Helix 130
AO4
A
4401 4406Right-handed alpha
Helix 131
AO5
A
4407 4439Right-handed alpha
Helix 132
AO6
A
4445 4457Right-handed alpha
Helix 133
AO7
A
4474 4498Right-handed alpha
Helix 134
AO8
A
4500 4507Right-handed alpha
Helix 135
AO9
A
4516 4533Right-handed alpha
Helix 136
AP1
A
4535 4537Right-handed 310
Helix 137
AP2
A
4631 4638Right-handed alpha
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There are 20 sheets in PDB entry 9BML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1476 1479first strand
Strand 2
A
1485 1488anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1663 1666first strand
Strand 2
A
1672 1677anti-parallel
Strand 3
A
1683 1691anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1843 1846first strand
Strand 2
A
1857 1861anti-parallel
Strand 3
A
1864 1867anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1901 1905first strand
Strand 2
A
2036 2040parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1927 1929first strand
Strand 2
A
1954 1958parallel
Strand 3
A
2013 2017parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1998 2000first strand
Strand 2
A
2005 2007anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2249 2253first strand
Strand 2
A
2298 2304parallel
Strand 3
A
2339 2345parallel
Strand 4
A
2219 2223parallel
Strand 5
A
2360 2363parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2266 2268first strand
Strand 2
A
2275 2277anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2324 2326first strand
Strand 2
A
2332 2334anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2537 2539first strand
Strand 2
A
2545 2547anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2615 2620first strand
Strand 2
A
2658 2663parallel
Strand 3
A
2706 2712parallel
Strand 4
A
2591 2594parallel
Strand 5
A
2733 2735parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2639 2644first strand
Strand 2
A
2647 2652anti-parallel
Strand 3
A
2699 2703parallel
Strand 4
A
2691 2694anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2873 2874first strand
Strand 2
A
2882 2883anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2957 2959first strand
Strand 2
A
2990 2995parallel
Strand 3
A
3062 3068parallel
Strand 4
A
2932 2936parallel
Strand 5
A
3089 3093parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3610 3613first strand
Strand 2
A
3633 3636parallel
Strand 3
A
3677 3681parallel
Strand 4
A
3587 3590parallel
Strand 5
A
3697 3700parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3654 3656first strand
Strand 2
A
3659 3664anti-parallel
Strand 3
A
3667 3670anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4066 4070first strand
Strand 2
A
4093 4097parallel
Strand 3
A
4123 4129parallel
Strand 4
A
4041 4045parallel
Strand 5
A
4143 4147parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4283 4285first strand
Strand 2
A
4294 4295anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4508 4510first strand
Strand 2
A
4558 4561parallel
Strand 3
A
4587 4594anti-parallel
Strand 4
A
4539 4546anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4564 4571first strand
Strand 2
A
4574 4584anti-parallel
Strand 3
A
4618 4626parallel
Strand 4
A
4604 4610anti-parallel
Strand 5
A
4641 4643parallel
Strand 6
A
4564 4571anti-parallel
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