Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BOF entry

There are 6 chains in PDB entry 9BOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 230	GLY 517
B	PRO 230	GLY 517
C	ASP 1	LYS 112
E	VAL 1	SER 133
G	VAL 1	SER 133
H	ASP 1	LYS 112

There are 12 helices in PDB entry 9BOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	237	241	Right-handed 310
Helix 2	AA2	A	438	449	Right-handed alpha
Helix 3	AA3	A	491	495	Right-handed 310
Helix 4	AA4	B	237	241	Right-handed 310
Helix 5	AA5	B	438	449	Right-handed alpha
Helix 6	AA6	B	491	495	Right-handed 310
Helix 7	AA7	E	27	31	Right-handed 310
Helix 8	AA8	E	86	90	Right-handed 310
Helix 9	AA9	E	106	111	Right-handed alpha
Helix 10	AB1	G	27	31	Right-handed 310
Helix 11	AB2	G	86	90	Right-handed 310
Helix 12	AB3	G	106	111	Right-handed alpha

There are 16 sheets in PDB entry 9BOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	255	first strand
Strand 2	A	417	425	anti-parallel
Strand 3	A	431	435	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	255	first strand
Strand 2	A	417	425	anti-parallel
Strand 3	A	480	483	anti-parallel
Strand 4	A	469	476	anti-parallel
Strand 5	A	456	462	anti-parallel
Strand 6	A	500	507	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	327	333	anti-parallel
Strand 3	A	367	377	anti-parallel
Strand 4	A	289	294	anti-parallel
Strand 5	A	298	302	anti-parallel
Strand 6	A	358	360	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	255	first strand
Strand 2	B	417	425	anti-parallel
Strand 3	B	431	435	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	255	first strand
Strand 2	B	417	425	anti-parallel
Strand 3	B	480	483	anti-parallel
Strand 4	B	469	476	anti-parallel
Strand 5	B	456	462	anti-parallel
Strand 6	B	500	507	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	327	333	anti-parallel
Strand 3	B	367	377	anti-parallel
Strand 4	B	289	294	anti-parallel
Strand 5	B	298	302	anti-parallel
Strand 6	B	358	360	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	107	111	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	38	43	anti-parallel
Strand 5	C	50	54	anti-parallel
Strand 6	C	58	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	16	24	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	33	38	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	120	123	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	33	38	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	127	129	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	16	24	anti-parallel
Strand 3	G	77	83	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	44	50	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	91	98	anti-parallel
Strand 5	G	120	123	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	44	50	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	91	98	anti-parallel
Strand 5	G	127	129	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	50	54	anti-parallel
Strand 6	H	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOF