Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BOG entry

There are 4 chains in PDB entry 9BOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 2	ARG 833
F	ALA 1	GLN 154
C	GLY 1	GLU 205
H	PHE 1	GLN 279

There are 13 helices in PDB entry 9BOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	5	10	Right-handed alpha
Helix 2	AA2	D	19	24	Right-handed alpha
Helix 3	AA3	D	65	73	Right-handed alpha
Helix 4	AA4	D	92	97	Right-handed alpha
Helix 5	AA5	D	116	120	Right-handed 310
Helix 6	AA6	D	129	133	Right-handed 310
Helix 7	AA7	D	246	250	Right-handed 310
Helix 8	AA8	D	443	448	Right-handed alpha
Helix 9	AA9	D	817	822	Right-handed 310
Helix 10	AB1	F	30	36	Right-handed alpha
Helix 11	AB2	C	96	100	Right-handed 310
Helix 12	AB3	C	125	129	Right-handed 310
Helix 13	AB4	H	65	69	Right-handed 310

There are 25 sheets in PDB entry 9BOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	110	114	parallel
Strand 4	D	101	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	60	62	anti-parallel

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There are 27 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	662	666	first strand
Strand 3	D	140	149	first strand
Strand 4	D	161	170	anti-parallel
Strand 5	D	176	185	anti-parallel
Strand 6	D	197	209	anti-parallel
Strand 7	D	214	222	anti-parallel
Strand 8	D	232	240	anti-parallel
Strand 9	D	329	338	anti-parallel
Strand 10	D	349	359	anti-parallel
Strand 11	D	363	372	anti-parallel
Strand 12	D	376	385	anti-parallel
Strand 13	D	391	403	anti-parallel
Strand 14	D	407	419	anti-parallel
Strand 15	D	428	437	anti-parallel
Strand 16	D	480	492	anti-parallel
Strand 17	D	496	507	anti-parallel
Strand 18	D	514	524	anti-parallel
Strand 19	D	529	538	anti-parallel
Strand 20	D	546	556	anti-parallel
Strand 21	D	573	580	anti-parallel
Strand 22	D	585	595	anti-parallel
Strand 23	D	602	613	anti-parallel
Strand 24	D	622	628	anti-parallel
Strand 25	D	634	641	anti-parallel
Strand 26	D	645	659	anti-parallel
Strand 27	D	662	666	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	283	287	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	280	first strand
Strand 2	D	264	270	anti-parallel
Strand 3	D	299	304	anti-parallel
Strand 4	D	310	315	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	701	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	740	744	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	714	first strand
Strand 2	D	730	733	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	726	first strand
Strand 2	D	747	748	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	763	first strand
Strand 2	D	751	759	anti-parallel
Strand 3	D	786	792	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	763	first strand
Strand 2	D	751	759	anti-parallel
Strand 3	D	825	831	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	780	first strand
Strand 2	D	769	772	anti-parallel
Strand 3	D	795	801	anti-parallel
Strand 4	D	810	815	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	171	first strand
Strand 2	F	3	9	parallel
Strand 3	H	268	277	anti-parallel
Strand 4	H	191	198	anti-parallel
Strand 5	H	238	243	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	48	53	anti-parallel
Strand 3	F	123	132	anti-parallel
Strand 4	F	92	96	anti-parallel
Strand 5	F	79	80	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	C	102	116	anti-parallel
Strand 3	C	8	12	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	116	first strand
Strand 2	F	62	69	anti-parallel
Strand 3	F	144	152	anti-parallel
Strand 4	C	102	116	parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	31	39	anti-parallel
Strand 7	C	54	57	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	63	67	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	172	175	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	165	166	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	185	190	anti-parallel
Strand 4	C	200	201	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	42	45	anti-parallel
Strand 4	H	101	102	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	22	first strand
Strand 2	H	141	150	parallel
Strand 3	H	125	135	anti-parallel
Strand 4	H	54	63	anti-parallel
Strand 5	H	93	95	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	37	first strand
Strand 2	H	105	111	anti-parallel
Strand 3	H	71	77	anti-parallel
Strand 4	H	80	84	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	120	first strand
Strand 2	H	154	156	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	181	first strand
Strand 2	H	252	257	anti-parallel
Strand 3	H	222	227	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	184	185	first strand
Strand 2	H	248	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOG