Analysis of interatomic Contacts of Structural Units in PDB entry:
9BON


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BON entry

There are 2 chains in PDB entry 9BON (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 548
B
 MET 1LYS 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9BON. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
43 65Right-handed alpha
Helix 4
AA4
A
70 92Right-handed alpha
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
139 159Right-handed alpha
Helix 7
AA7
A
169 193Right-handed alpha
Helix 8
AA8
A
201 215Right-handed alpha
Helix 9
AA9
A
217 235Right-handed alpha
Helix 10
AB1
A
248 261Right-handed alpha
Helix 11
AB2
A
264 281Right-handed alpha
Helix 12
AB3
A
308 325Right-handed alpha
Helix 13
AB4
A
332 337Right-handed alpha
Helix 14
AB5
A
339 352Right-handed alpha
Helix 15
AB6
A
355 360Right-handed alpha
Helix 16
AB7
A
393 421Right-handed alpha
Helix 17
AB8
A
423 439Right-handed alpha
Helix 18
AB9
A
442 450Right-handed alpha
Helix 19
AC1
A
451 455Right-handed 310
Helix 20
AC2
A
462 466Right-handed 310
Helix 21
AC3
A
469 482Right-handed alpha
Helix 22
AC4
A
493 498Right-handed alpha
Helix 23
AC5
A
499 501Right-handed 310
Helix 24
AC6
A
503 505Right-handed 310
Helix 25
AC7
A
511 518Right-handed alpha
Helix 26
AC8
A
522 538Right-handed alpha
Helix 27
AC9
B
5 13Right-handed alpha
Helix 28
AD1
B
20 38Right-handed alpha
Helix 29
AD2
B
43 65Right-handed alpha
Helix 30
AD3
B
70 90Right-handed alpha
Helix 31
AD4
B
110 124Right-handed alpha
Helix 32
AD5
B
139 159Right-handed alpha
Helix 33
AD6
B
169 193Right-handed alpha
Helix 34
AD7
B
201 214Right-handed alpha
Helix 35
AD8
B
217 235Right-handed alpha
Helix 36
AD9
B
241 243Right-handed 310
Helix 37
AE1
B
248 261Right-handed alpha
Helix 38
AE2
B
264 281Right-handed alpha
Helix 39
AE3
B
308 325Right-handed alpha
Helix 40
AE4
B
332 337Right-handed alpha
Helix 41
AE5
B
339 352Right-handed alpha
Helix 42
AE6
B
355 360Right-handed alpha
Helix 43
AE7
B
393 421Right-handed alpha
Helix 44
AE8
B
423 439Right-handed alpha
Helix 45
AE9
B
442 450Right-handed alpha
Helix 46
AF1
B
451 455Right-handed 310
Helix 47
AF2
B
469 483Right-handed alpha
Helix 48
AF3
B
493 498Right-handed alpha
Helix 49
AF4
B
499 501Right-handed 310
Helix 50
AF5
B
503 505Right-handed 310
Helix 51
AF6
B
522 536Right-handed alpha
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There are 6 sheets in PDB entry 9BON. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
128 133parallel
Strand 3
A
99 103parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
374 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
507 508anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
367 368anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
128 133parallel
Strand 3
B
99 103parallel
Strand 4
B
282 285parallel
Strand 5
B
381 389anti-parallel
Strand 6
B
374 378anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
507 508anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il