Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BOP entry

There are 16 chains in PDB entry 9BOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1VAL 123
B
 VAL 2VAL 110
M
 GLN 1VAL 120
N
 ASP 1VAL 109
O
 GLN 1VAL 120
P
 ASP 1VAL 109
S
 SER 32GLU 287
V
 ALA 503HIS 613
C
 GLN 1VAL 123
E
 GLN 1VAL 123
D
 VAL 2VAL 110
F
 VAL 2VAL 110
W
 ALA 503HIS 613
X
 ALA 503HIS 613
T
 SER 32GLU 287
U
 SER 32GLU 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9BOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
M
27 31Right-handed 310
Helix 3
AA3
M
60 63Right-handed 310
Helix 4
AA4
M
84 88Right-handed 310
Helix 5
AA5
N
79 83Right-handed 310
Helix 6
AA6
S
71 74Right-handed 310
Helix 7
AA7
S
78 83Right-handed alpha
Helix 8
AA8
S
249 264Right-handed alpha
Helix 9
AA9
V
553 576Right-handed alpha
Helix 10
AB1
V
583 597Right-handed alpha
Helix 11
AB2
C
89 93Right-handed 310
Helix 12
AB3
E
89 93Right-handed 310
Helix 13
AB4
W
553 576Right-handed alpha
Helix 14
AB5
W
583 597Right-handed alpha
Helix 15
AB6
X
553 576Right-handed alpha
Helix 16
AB7
X
583 597Right-handed alpha
Helix 17
AB8
T
71 74Right-handed 310
Helix 18
AB9
T
78 83Right-handed alpha
Helix 19
AC1
T
249 264Right-handed alpha
Helix 20
AC2
U
71 74Right-handed 310
Helix 21
AC3
U
78 83Right-handed alpha
Helix 22
AC4
U
249 264Right-handed alpha
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There are 49 sheets in PDB entry 9BOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
71 74anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
94 104anti-parallel
Strand 5
A
107 114anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
94 104anti-parallel
Strand 5
A
119 121anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
106 109parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
106 109parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
101 102anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
62 67anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
2 6first strand
Strand 2
M
17 24anti-parallel
Strand 3
M
75 80anti-parallel
Strand 4
M
66 71anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
56 58first strand
Strand 2
M
44 50anti-parallel
Strand 3
M
33 38anti-parallel
Strand 4
M
89 91anti-parallel
Strand 5
M
116 118anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
96 97first strand
Strand 2
M
108 109anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 6first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
70 76anti-parallel
Strand 4
N
62 67anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 11first strand
Strand 2
N
106 108parallel
Strand 3
N
85 90anti-parallel
Strand 4
N
33 38anti-parallel
Strand 5
N
45 49anti-parallel
Strand 6
N
53 54anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
2 6first strand
Strand 2
O
20 24anti-parallel
Strand 3
O
75 80anti-parallel
Strand 4
O
17 18anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
2 6first strand
Strand 2
O
20 24anti-parallel
Strand 3
O
75 80anti-parallel
Strand 4
O
66 71anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
56 58first strand
Strand 2
O
45 50anti-parallel
Strand 3
O
33 38anti-parallel
Strand 4
O
94 97anti-parallel
Strand 5
O
108 112anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
56 58first strand
Strand 2
O
45 50anti-parallel
Strand 3
O
33 38anti-parallel
Strand 4
O
89 91anti-parallel
Strand 5
O
116 118anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
4 6first strand
Strand 2
P
20 25anti-parallel
Strand 3
P
70 74anti-parallel
Strand 4
P
63 67anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 11first strand
Strand 2
P
106 108parallel
Strand 3
P
85 90anti-parallel
Strand 4
P
33 38anti-parallel
Strand 5
P
45 49anti-parallel
Strand 6
P
53 54anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
42 45first strand
Strand 2
S
36 39anti-parallel
Strand 3
S
178 185parallel
Strand 4
S
63 69anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
42 45first strand
Strand 2
S
36 39anti-parallel
Strand 3
S
178 185parallel
Strand 4
S
159 160anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
86 89first strand
Strand 2
S
151 154anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
165 167first strand
Strand 2
S
96 98anti-parallel
Strand 3
V
580 581parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
101 103first strand
Strand 2
V
516 519anti-parallel
Strand 3
V
546 547anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
105 114first strand
Strand 2
S
135 144parallel
Strand 3
S
216 223parallel
Strand 4
S
231 235anti-parallel
Strand 5
S
240 243anti-parallel
Strand 6
S
273 277parallel
Strand 7
S
285 286anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
601 602first strand
Strand 2
W
610 611parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
610 611first strand
Strand 2
X
601 602parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
17 22anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 73anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
46 53anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
94 104anti-parallel
Strand 5
C
107 114anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
46 53anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
94 104anti-parallel
Strand 5
C
119 121anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
17 22anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
72 74anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 63first strand
Strand 2
E
46 53anti-parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
94 104anti-parallel
Strand 5
E
107 114anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 63first strand
Strand 2
E
46 53anti-parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
94 104anti-parallel
Strand 5
E
119 121anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
24 25anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
106 109parallel
Strand 3
D
85 91anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 49anti-parallel
Strand 6
D
53 54anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
106 109parallel
Strand 3
D
85 91anti-parallel
Strand 4
D
100 102anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
70 75anti-parallel
Strand 3
D
62 67anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 67anti-parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
106 109parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 49anti-parallel
Strand 6
F
53 54anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
546 547first strand
Strand 2
W
516 519anti-parallel
Strand 3
T
101 103anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
580 581first strand
Strand 2
T
96 98parallel
Strand 3
T
165 167anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
546 547first strand
Strand 2
X
516 519anti-parallel
Strand 3
U
101 103anti-parallel
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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
580 581first strand
Strand 2
U
96 98parallel
Strand 3
U
165 167anti-parallel
Strand 4
U
159 162anti-parallel
Strand 5
U
177 185anti-parallel
Strand 6
U
36 39parallel
Strand 7
U
42 45anti-parallel
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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
580 581first strand
Strand 2
U
96 98parallel
Strand 3
U
165 167anti-parallel
Strand 4
U
159 162anti-parallel
Strand 5
U
177 185anti-parallel
Strand 6
U
63 69anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
42 45first strand
Strand 2
T
36 39anti-parallel
Strand 3
T
178 185parallel
Strand 4
T
63 69anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
42 45first strand
Strand 2
T
36 39anti-parallel
Strand 3
T
178 185parallel
Strand 4
T
159 160anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
86 89first strand
Strand 2
T
151 154anti-parallel
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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
105 114first strand
Strand 2
T
135 144parallel
Strand 3
T
216 223parallel
Strand 4
T
231 235anti-parallel
Strand 5
T
240 243anti-parallel
Strand 6
T
273 277parallel
Strand 7
T
285 286anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
86 89first strand
Strand 2
U
151 154anti-parallel
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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
105 114first strand
Strand 2
U
135 144parallel
Strand 3
U
216 219parallel
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There are 7 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
105 114first strand
Strand 2
U
135 144parallel
Strand 3
U
222 223parallel
Strand 4
U
231 235anti-parallel
Strand 5
U
240 243anti-parallel
Strand 6
U
273 277parallel
Strand 7
U
285 286anti-parallel
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