Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BOR entry

There are 3 chains in PDB entry 9BOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 415LYS 709
B
 ASN 247PRO 366
C
 ASN 247LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9BOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
416 429Right-handed alpha
Helix 2
AA2
A
446 455Right-handed alpha
Helix 3
AA3
A
456 470Right-handed alpha
Helix 4
AA4
A
482 490Right-handed alpha
Helix 5
AA5
A
492 502Right-handed alpha
Helix 6
AA6
A
515 524Right-handed alpha
Helix 7
AA7
A
525 538Right-handed alpha
Helix 8
AA8
A
554 571Right-handed alpha
Helix 9
AA9
A
578 602Right-handed alpha
Helix 10
AB1
A
615 623Right-handed alpha
Helix 11
AB2
A
625 634Right-handed alpha
Helix 12
AB3
A
637 642Right-handed alpha
Helix 13
AB4
A
651 659Right-handed alpha
Helix 14
AB5
A
664 675Right-handed alpha
Helix 15
AB6
A
688 693Right-handed 310
Helix 16
AB7
A
696 708Right-handed alpha
Helix 17
AB8
B
299 301Right-handed 310
Helix 18
AB9
B
356 362Right-handed alpha
Helix 19
AC1
C
299 301Right-handed 310
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There are 4 sheets in PDB entry 9BOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
265 270anti-parallel
Strand 3
B
308 312anti-parallel
Strand 4
B
303 304anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 259first strand
Strand 2
B
343 348parallel
Strand 3
B
325 333anti-parallel
Strand 4
B
278 285anti-parallel
Strand 5
B
291 295anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
265 270anti-parallel
Strand 3
C
308 312anti-parallel
Strand 4
C
303 304anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 259first strand
Strand 2
C
343 348parallel
Strand 3
C
325 333anti-parallel
Strand 4
C
278 284anti-parallel
Strand 5
C
292 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il