Analysis of interatomic Contacts of Structural Units in PDB entry:
9BOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BOW entry

There are 3 chains in PDB entry 9BOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6HIS 225
A
 THR 227PRO 407
B
 LYS 6PRO 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9BOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
45 50Right-handed 310
Helix 4
AA4
A
64 83Right-handed alpha
Helix 5
AA5
A
93 106Right-handed alpha
Helix 6
AA6
A
117 120Right-handed 310
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
130 136Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
201 207Right-handed alpha
Helix 12
AB3
A
240 252Right-handed alpha
Helix 13
AB4
A
260 276Right-handed alpha
Helix 14
AB5
A
276 300Right-handed alpha
Helix 15
AB6
A
306 308Right-handed 310
Helix 16
AB7
A
319 322Right-handed 310
Helix 17
AB8
A
324 335Right-handed alpha
Helix 18
AB9
A
361 367Right-handed alpha
Helix 19
AC1
A
370 372Right-handed 310
Helix 20
AC2
A
373 388Right-handed alpha
Helix 21
AC3
A
390 403Right-handed alpha
Helix 22
AC4
B
8 25Right-handed alpha
Helix 23
AC5
B
36 44Right-handed alpha
Helix 24
AC6
B
45 50Right-handed 310
Helix 25
AC7
B
64 83Right-handed alpha
Helix 26
AC8
B
93 106Right-handed alpha
Helix 27
AC9
B
122 126Right-handed 310
Helix 28
AD1
B
130 136Right-handed alpha
Helix 29
AD2
B
151 163Right-handed alpha
Helix 30
AD3
B
179 190Right-handed alpha
Helix 31
AD4
B
201 207Right-handed alpha
Helix 32
AD5
B
240 252Right-handed alpha
Helix 33
AD6
B
260 275Right-handed alpha
Helix 34
AD7
B
276 299Right-handed alpha
Helix 35
AD8
B
306 308Right-handed 310
Helix 36
AD9
B
319 322Right-handed 310
Helix 37
AE1
B
324 335Right-handed alpha
Helix 38
AE2
B
361 367Right-handed alpha
Helix 39
AE3
B
370 372Right-handed 310
Helix 40
AE4
B
373 388Right-handed alpha
Helix 41
AE5
B
390 403Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9BOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
337 338parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 169parallel
Strand 6
A
111 115parallel
Strand 7
A
137 141parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
337 338parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
193 197parallel
Strand 5
B
166 169parallel
Strand 6
B
111 115parallel
Strand 7
B
137 141parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
356 360anti-parallel
Strand 4
B
340 342anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il