Analysis of interatomic Contacts of Structural Units in PDB entry:
9BP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BP0 entry

There are 5 chains in PDB entry 9BP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 8	GLU 424
B	MET 8	ARG 422
C	MET 8	ARG 422
D	MET 8	ASP 425
E	VAL 29	LEU 475

There are 41 helices in PDB entry 9BP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	19	Right-handed alpha
Helix 2	AA2	A	20	23	Right-handed 310
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	86	93	Right-handed 310
Helix 5	AA5	A	144	147	Right-handed 310
Helix 6	AA6	A	220	244	Right-handed alpha
Helix 7	AA7	A	248	273	Right-handed alpha
Helix 8	AA8	A	281	309	Right-handed alpha
Helix 9	AA9	A	388	420	Right-handed alpha
Helix 10	AB1	B	9	19	Right-handed alpha
Helix 11	AB2	B	20	23	Right-handed 310
Helix 12	AB3	B	71	74	Right-handed 310
Helix 13	AB4	B	86	92	Right-handed 310
Helix 14	AB5	B	220	244	Right-handed alpha
Helix 15	AB6	B	248	273	Right-handed alpha
Helix 16	AB7	B	281	309	Right-handed alpha
Helix 17	AB8	B	387	420	Right-handed alpha
Helix 18	AB9	C	9	18	Right-handed alpha
Helix 19	AC1	C	19	23	Right-handed 310
Helix 20	AC2	C	71	74	Right-handed 310
Helix 21	AC3	C	86	93	Right-handed 310
Helix 22	AC4	C	220	242	Right-handed alpha
Helix 23	AC5	C	248	273	Right-handed alpha
Helix 24	AC6	C	281	309	Right-handed alpha
Helix 25	AC7	C	387	420	Right-handed alpha
Helix 26	AC8	D	9	19	Right-handed alpha
Helix 27	AC9	D	70	74	Right-handed 310
Helix 28	AD1	D	86	93	Right-handed 310
Helix 29	AD2	D	144	147	Right-handed 310
Helix 30	AD3	D	220	243	Right-handed alpha
Helix 31	AD4	D	248	271	Right-handed alpha
Helix 32	AD5	D	281	309	Right-handed alpha
Helix 33	AD6	D	388	420	Right-handed alpha
Helix 34	AD7	E	30	39	Right-handed alpha
Helix 35	AD8	E	92	95	Right-handed 310
Helix 36	AD9	E	111	115	Right-handed 310
Helix 37	AE1	E	244	249	Right-handed alpha
Helix 38	AE2	E	251	268	Right-handed alpha
Helix 39	AE3	E	272	297	Right-handed alpha
Helix 40	AE4	E	305	333	Right-handed alpha
Helix 41	AE5	E	445	475	Right-handed alpha

There are 23 sheets in PDB entry 9BP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	166	169	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	126	136	anti-parallel
Strand 4	A	103	107	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	126	136	anti-parallel
Strand 4	A	57	68	anti-parallel
Strand 5	A	42	52	anti-parallel
Strand 6	A	176	178	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	149	157	anti-parallel
Strand 3	A	209	218	anti-parallel
Strand 4	A	187	196	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	205	206	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	125	134	anti-parallel
Strand 4	B	57	69	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	166	169	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	125	134	anti-parallel
Strand 3	B	57	69	anti-parallel
Strand 4	B	37	52	anti-parallel
Strand 5	B	176	178	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	194	196	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	166	169	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	116	120	anti-parallel
Strand 3	C	125	136	anti-parallel
Strand 4	C	106	107	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	116	120	anti-parallel
Strand 3	C	125	136	anti-parallel
Strand 4	C	57	69	anti-parallel
Strand 5	C	43	52	anti-parallel
Strand 6	C	176	178	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	209	218	anti-parallel
Strand 4	C	187	197	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	205	206	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	116	120	anti-parallel
Strand 3	D	126	136	anti-parallel
Strand 4	D	57	68	anti-parallel
Strand 5	D	37	52	anti-parallel
Strand 6	D	166	170	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	126	136	anti-parallel
Strand 3	D	57	68	anti-parallel
Strand 4	D	37	52	anti-parallel
Strand 5	D	176	178	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	149	157	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	187	189	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	149	157	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	194	196	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	205	206	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	139	144	anti-parallel
Strand 3	E	148	160	anti-parallel
Strand 4	E	78	90	anti-parallel
Strand 5	E	58	73	anti-parallel
Strand 6	E	189	193	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	148	160	anti-parallel
Strand 3	E	78	90	anti-parallel
Strand 4	E	58	73	anti-parallel
Strand 5	E	199	201	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	179	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	177	first strand
Strand 2	E	234	242	anti-parallel
Strand 3	E	209	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BP0