Analysis of interatomic Contacts of Structural Units in PDB entry:
9BP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BP9 entry

There are 2 chains in PDB entry 9BP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 68LEU 891
C
 LYS 68LEU 891
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9BP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 88Right-handed alpha
Helix 2
AA2
A
93 101Right-handed alpha
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
121 135Right-handed alpha
Helix 5
AA5
A
146 162Right-handed alpha
Helix 6
AA6
A
191 204Right-handed alpha
Helix 7
AA7
A
217 222Right-handed 310
Helix 8
AA8
A
226 244Right-handed alpha
Helix 9
AA9
A
270 278Right-handed alpha
Helix 10
AB1
A
325 336Right-handed alpha
Helix 11
AB2
A
346 367Right-handed alpha
Helix 12
AB3
A
384 396Right-handed alpha
Helix 13
AB4
A
402 409Right-handed alpha
Helix 14
AB5
A
421 434Right-handed alpha
Helix 15
AB6
A
444 449Right-handed alpha
Helix 16
AB7
A
470 479Right-handed alpha
Helix 17
AB8
A
499 510Right-handed alpha
Helix 18
AB9
A
528 541Right-handed alpha
Helix 19
AC1
A
546 555Right-handed alpha
Helix 20
AC2
A
557 563Right-handed alpha
Helix 21
AC3
A
581 592Right-handed alpha
Helix 22
AC4
A
612 621Right-handed alpha
Helix 23
AC5
A
624 641Right-handed alpha
Helix 24
AC6
A
648 653Right-handed alpha
Helix 25
AC7
A
665 675Right-handed alpha
Helix 26
AC8
A
679 688Right-handed alpha
Helix 27
AC9
A
711 730Right-handed alpha
Helix 28
AD1
A
733 742Right-handed alpha
Helix 29
AD2
A
744 769Right-handed alpha
Helix 30
AD3
A
771 779Right-handed alpha
Helix 31
AD4
A
780 787Right-handed alpha
Helix 32
AD5
A
790 795Right-handed 310
Helix 33
AD6
A
807 813Right-handed alpha
Helix 34
AD7
A
817 823Right-handed alpha
Helix 35
AD8
A
825 835Right-handed alpha
Helix 36
AD9
A
871 890Right-handed alpha
Helix 37
AE1
C
77 88Right-handed alpha
Helix 38
AE2
C
93 101Right-handed alpha
Helix 39
AE3
C
116 120Right-handed 310
Helix 40
AE4
C
121 135Right-handed alpha
Helix 41
AE5
C
146 162Right-handed alpha
Helix 42
AE6
C
191 204Right-handed alpha
Helix 43
AE7
C
217 222Right-handed 310
Helix 44
AE8
C
226 244Right-handed alpha
Helix 45
AE9
C
270 278Right-handed alpha
Helix 46
AF1
C
325 336Right-handed alpha
Helix 47
AF2
C
346 367Right-handed alpha
Helix 48
AF3
C
384 396Right-handed alpha
Helix 49
AF4
C
402 409Right-handed alpha
Helix 50
AF5
C
421 434Right-handed alpha
Helix 51
AF6
C
444 449Right-handed alpha
Helix 52
AF7
C
470 479Right-handed alpha
Helix 53
AF8
C
499 510Right-handed alpha
Helix 54
AF9
C
528 541Right-handed alpha
Helix 55
AG1
C
546 555Right-handed alpha
Helix 56
AG2
C
557 563Right-handed alpha
Helix 57
AG3
C
581 592Right-handed alpha
Helix 58
AG4
C
612 621Right-handed alpha
Helix 59
AG5
C
624 641Right-handed alpha
Helix 60
AG6
C
648 653Right-handed alpha
Helix 61
AG7
C
665 675Right-handed alpha
Helix 62
AG8
C
679 688Right-handed alpha
Helix 63
AG9
C
711 730Right-handed alpha
Helix 64
AH1
C
733 742Right-handed alpha
Helix 65
AH2
C
744 769Right-handed alpha
Helix 66
AH3
C
771 779Right-handed alpha
Helix 67
AH4
C
780 787Right-handed alpha
Helix 68
AH5
C
790 795Right-handed 310
Helix 69
AH6
C
807 813Right-handed alpha
Helix 70
AH7
C
817 823Right-handed alpha
Helix 71
AH8
C
825 835Right-handed alpha
Helix 72
AH9
C
871 890Right-handed alpha
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There are 10 sheets in PDB entry 9BP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
186 190parallel
Strand 3
A
139 144parallel
Strand 4
A
210 215parallel
Strand 5
A
260 265parallel
Strand 6
A
111 114parallel
Strand 7
A
281 284parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
292 298anti-parallel
Strand 4
A
490 495parallel
Strand 5
A
456 459parallel
Strand 6
A
340 343parallel
Strand 7
A
439 442parallel
Strand 8
A
413 416parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
467 468anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
608 611anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 864first strand
Strand 2
A
868 870anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 171first strand
Strand 2
C
186 190parallel
Strand 3
C
139 144parallel
Strand 4
C
210 215parallel
Strand 5
C
260 265parallel
Strand 6
C
111 114parallel
Strand 7
C
281 284parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 312first strand
Strand 2
C
301 303anti-parallel
Strand 3
C
292 298anti-parallel
Strand 4
C
490 495parallel
Strand 5
C
456 459parallel
Strand 6
C
340 343parallel
Strand 7
C
439 442parallel
Strand 8
C
413 416parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
463 464first strand
Strand 2
C
467 468anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
595 598first strand
Strand 2
C
608 611anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
862 864first strand
Strand 2
C
868 870anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il