Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPA entry

There are 4 chains in PDB entry 9BPA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 68	LEU 891
C	LYS 68	LEU 891
E	LYS 68	LEU 891
G	LYS 68	LEU 891

There are144 helices in PDB entry 9BPA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	88	Right-handed alpha
Helix 2	AA2	A	93	101	Right-handed alpha
Helix 3	AA3	A	116	120	Right-handed 310
Helix 4	AA4	A	121	135	Right-handed alpha
Helix 5	AA5	A	146	162	Right-handed alpha
Helix 6	AA6	A	191	204	Right-handed alpha
Helix 7	AA7	A	217	222	Right-handed 310
Helix 8	AA8	A	226	244	Right-handed alpha
Helix 9	AA9	A	270	278	Right-handed alpha
Helix 10	AB1	A	325	336	Right-handed alpha
Helix 11	AB2	A	346	367	Right-handed alpha
Helix 12	AB3	A	384	396	Right-handed alpha
Helix 13	AB4	A	402	409	Right-handed alpha
Helix 14	AB5	A	421	434	Right-handed alpha
Helix 15	AB6	A	443	449	Right-handed alpha
Helix 16	AB7	A	470	479	Right-handed alpha
Helix 17	AB8	A	499	510	Right-handed alpha
Helix 18	AB9	A	528	541	Right-handed alpha
Helix 19	AC1	A	546	555	Right-handed alpha
Helix 20	AC2	A	557	563	Right-handed alpha
Helix 21	AC3	A	581	592	Right-handed alpha
Helix 22	AC4	A	612	621	Right-handed alpha
Helix 23	AC5	A	624	641	Right-handed alpha
Helix 24	AC6	A	648	653	Right-handed alpha
Helix 25	AC7	A	665	675	Right-handed alpha
Helix 26	AC8	A	679	688	Right-handed alpha
Helix 27	AC9	A	711	730	Right-handed alpha
Helix 28	AD1	A	733	742	Right-handed alpha
Helix 29	AD2	A	744	769	Right-handed alpha
Helix 30	AD3	A	771	779	Right-handed alpha
Helix 31	AD4	A	780	787	Right-handed alpha
Helix 32	AD5	A	790	795	Right-handed 310
Helix 33	AD6	A	807	813	Right-handed alpha
Helix 34	AD7	A	817	823	Right-handed alpha
Helix 35	AD8	A	825	835	Right-handed alpha
Helix 36	AD9	A	871	890	Right-handed alpha
Helix 37	AE1	C	77	88	Right-handed alpha
Helix 38	AE2	C	93	101	Right-handed alpha
Helix 39	AE3	C	116	120	Right-handed 310
Helix 40	AE4	C	121	135	Right-handed alpha
Helix 41	AE5	C	146	162	Right-handed alpha
Helix 42	AE6	C	191	204	Right-handed alpha
Helix 43	AE7	C	217	222	Right-handed 310
Helix 44	AE8	C	226	244	Right-handed alpha
Helix 45	AE9	C	270	278	Right-handed alpha
Helix 46	AF1	C	325	336	Right-handed alpha
Helix 47	AF2	C	346	367	Right-handed alpha
Helix 48	AF3	C	384	396	Right-handed alpha
Helix 49	AF4	C	402	409	Right-handed alpha
Helix 50	AF5	C	421	434	Right-handed alpha
Helix 51	AF6	C	443	449	Right-handed alpha
Helix 52	AF7	C	470	479	Right-handed alpha
Helix 53	AF8	C	499	510	Right-handed alpha
Helix 54	AF9	C	528	541	Right-handed alpha
Helix 55	AG1	C	546	555	Right-handed alpha
Helix 56	AG2	C	557	563	Right-handed alpha
Helix 57	AG3	C	581	592	Right-handed alpha
Helix 58	AG4	C	612	621	Right-handed alpha
Helix 59	AG5	C	624	641	Right-handed alpha
Helix 60	AG6	C	648	653	Right-handed alpha
Helix 61	AG7	C	665	675	Right-handed alpha
Helix 62	AG8	C	679	688	Right-handed alpha
Helix 63	AG9	C	711	730	Right-handed alpha
Helix 64	AH1	C	733	742	Right-handed alpha
Helix 65	AH2	C	744	769	Right-handed alpha
Helix 66	AH3	C	771	779	Right-handed alpha
Helix 67	AH4	C	780	787	Right-handed alpha
Helix 68	AH5	C	790	795	Right-handed 310
Helix 69	AH6	C	807	813	Right-handed alpha
Helix 70	AH7	C	817	823	Right-handed alpha
Helix 71	AH8	C	825	835	Right-handed alpha
Helix 72	AH9	C	871	890	Right-handed alpha
Helix 73	AI1	E	77	88	Right-handed alpha
Helix 74	AI2	E	93	101	Right-handed alpha
Helix 75	AI3	E	116	120	Right-handed 310
Helix 76	AI4	E	121	135	Right-handed alpha
Helix 77	AI5	E	146	162	Right-handed alpha
Helix 78	AI6	E	191	204	Right-handed alpha
Helix 79	AI7	E	217	222	Right-handed 310
Helix 80	AI8	E	226	244	Right-handed alpha
Helix 81	AI9	E	270	278	Right-handed alpha
Helix 82	AJ1	E	325	336	Right-handed alpha
Helix 83	AJ2	E	346	367	Right-handed alpha
Helix 84	AJ3	E	384	396	Right-handed alpha
Helix 85	AJ4	E	402	409	Right-handed alpha
Helix 86	AJ5	E	421	434	Right-handed alpha
Helix 87	AJ6	E	444	449	Right-handed alpha
Helix 88	AJ7	E	470	479	Right-handed alpha
Helix 89	AJ8	E	499	510	Right-handed alpha
Helix 90	AJ9	E	528	541	Right-handed alpha
Helix 91	AK1	E	546	555	Right-handed alpha
Helix 92	AK2	E	557	563	Right-handed alpha
Helix 93	AK3	E	581	592	Right-handed alpha
Helix 94	AK4	E	612	621	Right-handed alpha
Helix 95	AK5	E	624	641	Right-handed alpha
Helix 96	AK6	E	648	653	Right-handed alpha
Helix 97	AK7	E	665	675	Right-handed alpha
Helix 98	AK8	E	679	688	Right-handed alpha
Helix 99	AK9	E	711	730	Right-handed alpha
Helix 100	AL1	E	733	742	Right-handed alpha
Helix 101	AL2	E	744	769	Right-handed alpha
Helix 102	AL3	E	771	779	Right-handed alpha
Helix 103	AL4	E	780	787	Right-handed alpha
Helix 104	AL5	E	790	795	Right-handed 310
Helix 105	AL6	E	807	813	Right-handed alpha
Helix 106	AL7	E	817	823	Right-handed alpha
Helix 107	AL8	E	825	835	Right-handed alpha
Helix 108	AL9	E	871	890	Right-handed alpha
Helix 109	AM1	G	77	88	Right-handed alpha
Helix 110	AM2	G	93	101	Right-handed alpha
Helix 111	AM3	G	116	120	Right-handed 310
Helix 112	AM4	G	121	135	Right-handed alpha
Helix 113	AM5	G	146	162	Right-handed alpha
Helix 114	AM6	G	191	204	Right-handed alpha
Helix 115	AM7	G	217	222	Right-handed 310
Helix 116	AM8	G	226	244	Right-handed alpha
Helix 117	AM9	G	270	278	Right-handed alpha
Helix 118	AN1	G	325	336	Right-handed alpha
Helix 119	AN2	G	346	367	Right-handed alpha
Helix 120	AN3	G	384	396	Right-handed alpha
Helix 121	AN4	G	402	409	Right-handed alpha
Helix 122	AN5	G	421	434	Right-handed alpha
Helix 123	AN6	G	443	449	Right-handed alpha
Helix 124	AN7	G	470	479	Right-handed alpha
Helix 125	AN8	G	499	510	Right-handed alpha
Helix 126	AN9	G	528	541	Right-handed alpha
Helix 127	AO1	G	546	555	Right-handed alpha
Helix 128	AO2	G	557	563	Right-handed alpha
Helix 129	AO3	G	581	592	Right-handed alpha
Helix 130	AO4	G	612	621	Right-handed alpha
Helix 131	AO5	G	624	641	Right-handed alpha
Helix 132	AO6	G	648	653	Right-handed alpha
Helix 133	AO7	G	665	675	Right-handed alpha
Helix 134	AO8	G	679	688	Right-handed alpha
Helix 135	AO9	G	711	730	Right-handed alpha
Helix 136	AP1	G	733	742	Right-handed alpha
Helix 137	AP2	G	744	769	Right-handed alpha
Helix 138	AP3	G	771	779	Right-handed alpha
Helix 139	AP4	G	780	787	Right-handed alpha
Helix 140	AP5	G	790	795	Right-handed 310
Helix 141	AP6	G	807	813	Right-handed alpha
Helix 142	AP7	G	817	823	Right-handed alpha
Helix 143	AP8	G	825	835	Right-handed alpha
Helix 144	AP9	G	871	890	Right-handed alpha

There are 20 sheets in PDB entry 9BPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	186	190	parallel
Strand 3	A	139	144	parallel
Strand 4	A	210	215	parallel
Strand 5	A	260	265	parallel
Strand 6	A	111	114	parallel
Strand 7	A	281	284	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	301	303	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	490	495	parallel
Strand 5	A	456	459	parallel
Strand 6	A	340	343	parallel
Strand 7	A	439	442	parallel
Strand 8	A	413	416	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	464	first strand
Strand 2	A	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	609	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	864	first strand
Strand 2	A	868	870	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	186	190	parallel
Strand 3	C	139	144	parallel
Strand 4	C	210	215	parallel
Strand 5	C	260	265	parallel
Strand 6	C	111	114	parallel
Strand 7	C	281	284	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	301	303	anti-parallel
Strand 3	C	292	298	anti-parallel
Strand 4	C	490	495	parallel
Strand 5	C	456	459	parallel
Strand 6	C	340	343	parallel
Strand 7	C	439	442	parallel
Strand 8	C	413	416	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	464	first strand
Strand 2	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	597	first strand
Strand 2	C	609	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	862	864	first strand
Strand 2	C	868	870	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	171	first strand
Strand 2	E	186	190	parallel
Strand 3	E	139	144	parallel
Strand 4	E	210	215	parallel
Strand 5	E	260	265	parallel
Strand 6	E	111	114	parallel
Strand 7	E	281	284	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	309	312	first strand
Strand 2	E	301	303	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	490	495	parallel
Strand 5	E	456	459	parallel
Strand 6	E	340	343	parallel
Strand 7	E	439	442	parallel
Strand 8	E	413	416	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	463	464	first strand
Strand 2	E	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	595	597	first strand
Strand 2	E	609	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	862	864	first strand
Strand 2	E	868	870	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	171	first strand
Strand 2	G	186	190	parallel
Strand 3	G	139	144	parallel
Strand 4	G	210	215	parallel
Strand 5	G	260	265	parallel
Strand 6	G	111	114	parallel
Strand 7	G	281	284	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	312	first strand
Strand 2	G	301	303	anti-parallel
Strand 3	G	292	298	anti-parallel
Strand 4	G	490	495	parallel
Strand 5	G	456	459	parallel
Strand 6	G	340	343	parallel
Strand 7	G	439	442	parallel
Strand 8	G	413	416	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	463	464	first strand
Strand 2	G	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	595	597	first strand
Strand 2	G	609	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	862	864	first strand
Strand 2	G	868	870	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPA