Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPD entry

There are 3 chains in PDB entry 9BPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 21	SER 326
B	ILE 21	SER 326
C	ILE 21	SER 326

There are 33 helices in PDB entry 9BPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed alpha
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	113	118	Right-handed 310
Helix 5	AA5	A	160	165	Right-handed 310
Helix 6	AA6	A	191	197	Right-handed alpha
Helix 7	AA7	A	212	221	Right-handed alpha
Helix 8	AA8	A	223	231	Right-handed alpha
Helix 9	AA9	A	247	251	Right-handed 310
Helix 10	AB1	A	261	264	Right-handed 310
Helix 11	AB2	A	313	326	Right-handed alpha
Helix 12	AB3	B	22	34	Right-handed alpha
Helix 13	AB4	B	71	76	Right-handed alpha
Helix 14	AB5	B	106	110	Right-handed 310
Helix 15	AB6	B	113	118	Right-handed 310
Helix 16	AB7	B	160	165	Right-handed 310
Helix 17	AB8	B	191	197	Right-handed alpha
Helix 18	AB9	B	212	221	Right-handed alpha
Helix 19	AC1	B	223	231	Right-handed alpha
Helix 20	AC2	B	247	251	Right-handed 310
Helix 21	AC3	B	261	264	Right-handed 310
Helix 22	AC4	B	313	326	Right-handed alpha
Helix 23	AC5	C	22	34	Right-handed alpha
Helix 24	AC6	C	71	76	Right-handed alpha
Helix 25	AC7	C	106	110	Right-handed 310
Helix 26	AC8	C	113	118	Right-handed 310
Helix 27	AC9	C	160	165	Right-handed 310
Helix 28	AD1	C	191	197	Right-handed alpha
Helix 29	AD2	C	212	221	Right-handed alpha
Helix 30	AD3	C	223	231	Right-handed alpha
Helix 31	AD4	C	247	251	Right-handed 310
Helix 32	AD5	C	261	264	Right-handed 310
Helix 33	AD6	C	313	326	Right-handed alpha

There are 18 sheets in PDB entry 9BPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	59	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	182	184	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	59	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	210	211	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	68	70	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	97	first strand
Strand 2	A	288	307	anti-parallel
Strand 3	A	232	241	parallel
Strand 4	A	254	259	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	97	first strand
Strand 2	A	288	307	anti-parallel
Strand 3	A	274	282	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	140	147	anti-parallel
Strand 3	A	127	134	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	168	175	anti-parallel
Strand 3	B	182	184	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	168	175	anti-parallel
Strand 3	B	210	211	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	68	70	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	97	first strand
Strand 2	B	288	307	anti-parallel
Strand 3	B	232	241	parallel
Strand 4	B	254	259	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	97	first strand
Strand 2	B	288	307	anti-parallel
Strand 3	B	274	282	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	140	147	anti-parallel
Strand 3	B	127	134	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	59	first strand
Strand 2	C	168	175	anti-parallel
Strand 3	C	182	184	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	59	first strand
Strand 2	C	168	175	anti-parallel
Strand 3	C	210	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	68	70	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	97	first strand
Strand 2	C	288	307	anti-parallel
Strand 3	C	232	241	parallel
Strand 4	C	254	259	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	97	first strand
Strand 2	C	288	307	anti-parallel
Strand 3	C	274	282	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	140	147	anti-parallel
Strand 3	C	127	134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPD