Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPG entry

There are 19 chains in PDB entry 9BPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 1	PHE 75
2	ASP 1	PHE 75
3	ASP 1	PHE 75
4	ASP 1	PHE 75
5	ASP 1	PHE 75
6	ASP 1	PHE 75
7	ASP 1	PHE 75
8	ASP 1	PHE 75
G	ILE 19	SER 232
H	GLN 15	GLY 148
I	SER 11	GLU 47
K	PRO 1	VAL 132
M	ARG 7	VAL 153
N	MET 1	GLU 219
P	UNK 1	UNK 44
Q	PRO 8	TRP 53
R	GLY 3	HIS 106
S	LEU 26	ARG 101
T	PHE 3	PHE 84

There are 82 helices in PDB entry 9BPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	1	15	Right-handed alpha
Helix 2	AA2	1	17	38	Right-handed alpha
Helix 3	AA3	1	39	41	Right-handed 310
Helix 4	AA4	1	42	74	Right-handed alpha
Helix 5	AA5	2	2	15	Right-handed alpha
Helix 6	AA6	2	16	38	Right-handed alpha
Helix 7	AA7	2	39	41	Right-handed 310
Helix 8	AA8	2	42	74	Right-handed alpha
Helix 9	AA9	3	2	15	Right-handed alpha
Helix 10	AB1	3	16	38	Right-handed alpha
Helix 11	AB2	3	39	41	Right-handed 310
Helix 12	AB3	3	42	73	Right-handed alpha
Helix 13	AB4	4	2	15	Right-handed alpha
Helix 14	AB5	4	17	38	Right-handed alpha
Helix 15	AB6	4	39	41	Right-handed 310
Helix 16	AB7	4	42	74	Right-handed alpha
Helix 17	AB8	5	2	15	Right-handed alpha
Helix 18	AB9	5	17	38	Right-handed alpha
Helix 19	AC1	5	39	41	Right-handed 310
Helix 20	AC2	5	42	73	Right-handed alpha
Helix 21	AC3	6	2	15	Right-handed alpha
Helix 22	AC4	6	17	38	Right-handed alpha
Helix 23	AC5	6	39	41	Right-handed 310
Helix 24	AC6	6	42	74	Right-handed alpha
Helix 25	AC7	7	2	16	Right-handed alpha
Helix 26	AC8	7	18	38	Right-handed alpha
Helix 27	AC9	7	39	41	Right-handed 310
Helix 28	AD1	7	42	75	Right-handed alpha
Helix 29	AD2	8	2	15	Right-handed alpha
Helix 30	AD3	8	17	38	Right-handed alpha
Helix 31	AD4	8	39	41	Right-handed 310
Helix 32	AD5	8	42	73	Right-handed alpha
Helix 33	AD6	G	23	36	Right-handed alpha
Helix 34	AD7	G	37	42	Right-handed alpha
Helix 35	AD8	G	42	56	Right-handed alpha
Helix 36	AD9	G	80	94	Right-handed alpha
Helix 37	AE1	G	105	117	Right-handed alpha
Helix 38	AE2	G	118	120	Right-handed 310
Helix 39	AE3	G	133	146	Right-handed alpha
Helix 40	AE4	G	176	182	Right-handed alpha
Helix 41	AE5	G	185	189	Right-handed 310
Helix 42	AE6	G	193	231	Right-handed alpha
Helix 43	AE7	H	104	121	Right-handed alpha
Helix 44	AE8	H	125	147	Right-handed alpha
Helix 45	AE9	I	12	16	Right-handed alpha
Helix 46	AF1	I	19	33	Right-handed alpha
Helix 47	AF2	I	38	44	Right-handed alpha
Helix 48	AF3	K	19	24	Right-handed alpha
Helix 49	AF4	K	25	30	Right-handed alpha
Helix 50	AF5	K	31	48	Right-handed alpha
Helix 51	AF6	K	56	126	Right-handed alpha
Helix 52	AF7	M	11	19	Right-handed alpha
Helix 53	AF8	M	20	24	Right-handed 310
Helix 54	AF9	M	25	37	Right-handed alpha
Helix 55	AG1	M	86	124	Right-handed alpha
Helix 56	AG2	M	131	139	Right-handed alpha
Helix 57	AG3	N	17	22	Right-handed 310
Helix 58	AG4	N	23	28	Right-handed alpha
Helix 59	AG5	N	38	56	Right-handed alpha
Helix 60	AG6	N	57	59	Right-handed 310
Helix 61	AG7	N	66	83	Right-handed alpha
Helix 62	AG8	N	84	86	Right-handed 310
Helix 63	AG9	N	91	94	Right-handed 310
Helix 64	AH1	N	95	117	Right-handed alpha
Helix 65	AH2	N	118	126	Right-handed alpha
Helix 66	AH3	N	132	134	Right-handed 310
Helix 67	AH4	N	135	175	Right-handed alpha
Helix 68	AH5	N	180	219	Right-handed alpha
Helix 69	AH6	P	6	11	Right-handed alpha
Helix 70	AH7	P	13	21	Right-handed alpha
Helix 71	AH8	P	23	44	Right-handed alpha
Helix 72	AH9	Q	9	30	Right-handed alpha
Helix 73	AI1	Q	40	45	Right-handed 310
Helix 74	AI2	R	29	33	Right-handed 310
Helix 75	AI3	R	37	45	Right-handed alpha
Helix 76	AI4	R	48	68	Right-handed alpha
Helix 77	AI5	R	75	93	Right-handed alpha
Helix 78	AI6	R	93	101	Right-handed alpha
Helix 79	AI7	S	27	37	Right-handed alpha
Helix 80	AI8	S	44	60	Right-handed alpha
Helix 81	AI9	S	68	93	Right-handed alpha
Helix 82	AJ1	T	12	77	Right-handed alpha

There are 4 sheets in PDB entry 9BPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	104	first strand
Strand 2	G	67	71	parallel
Strand 3	G	155	160	parallel
Strand 4	G	168	173	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	26	38	anti-parallel
Strand 3	H	17	21	anti-parallel
Strand 4	H	89	94	parallel
Strand 5	H	80	85	anti-parallel
Strand 6	H	54	58	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	26	38	anti-parallel
Strand 3	H	61	67	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPG