Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BPL entry

There are 2 chains in PDB entry 9BPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14PRO 479
B
 VAL 14PRO 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9BPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed 310
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
48 53Right-handed alpha
Helix 5
AA5
A
53 76Right-handed alpha
Helix 6
AA6
A
79 83Right-handed 310
Helix 7
AA7
A
86 94Right-handed alpha
Helix 8
AA8
A
102 114Right-handed alpha
Helix 9
AA9
A
115 116Right-handed 310
Helix 10
AB1
A
118 118Right-handed 310
Helix 11
AB2
A
119 130Right-handed alpha
Helix 12
AB3
A
148 168Right-handed alpha
Helix 13
AB4
A
168 184Right-handed alpha
Helix 14
AB5
A
185 188Right-handed 310
Helix 15
AB6
A
205 226Right-handed alpha
Helix 16
AB7
A
239 246Right-handed alpha
Helix 17
AB8
A
250 264Right-handed alpha
Helix 18
AB9
A
277 307Right-handed alpha
Helix 19
AC1
A
330 354Right-handed alpha
Helix 20
AC2
A
363 370Right-handed alpha
Helix 21
AC3
A
372 391Right-handed alpha
Helix 22
AC4
A
396 406Right-handed alpha
Helix 23
AC5
A
407 410Right-handed 310
Helix 24
AC6
A
411 422Right-handed alpha
Helix 25
AC7
A
426 433Right-handed alpha
Helix 26
AC8
A
442 452Right-handed alpha
Helix 27
AC9
A
457 466Right-handed alpha
Helix 28
AD1
B
35 39Right-handed 310
Helix 29
AD2
B
41 46Right-handed alpha
Helix 30
AD3
B
48 53Right-handed alpha
Helix 31
AD4
B
53 76Right-handed alpha
Helix 32
AD5
B
79 83Right-handed 310
Helix 33
AD6
B
86 97Right-handed alpha
Helix 34
AD7
B
102 114Right-handed alpha
Helix 35
AD8
B
120 130Right-handed alpha
Helix 36
AD9
B
138 143Right-handed 310
Helix 37
AE1
B
148 168Right-handed alpha
Helix 38
AE2
B
168 184Right-handed alpha
Helix 39
AE3
B
205 226Right-handed alpha
Helix 40
AE4
B
239 246Right-handed alpha
Helix 41
AE5
B
250 262Right-handed alpha
Helix 42
AE6
B
277 307Right-handed alpha
Helix 43
AE7
B
330 354Right-handed alpha
Helix 44
AE8
B
363 370Right-handed alpha
Helix 45
AE9
B
372 391Right-handed alpha
Helix 46
AF1
B
396 406Right-handed alpha
Helix 47
AF2
B
407 410Right-handed 310
Helix 48
AF3
B
411 422Right-handed alpha
Helix 49
AF4
B
426 435Right-handed alpha
Helix 50
AF5
B
442 452Right-handed alpha
Helix 51
AF6
B
457 466Right-handed alpha
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There are 6 sheets in PDB entry 9BPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
198 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
266 267parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
393 395anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
198 204anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
266 267parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
393 395anti-parallel
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