Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPM entry

There are 8 chains in PDB entry 9BPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	PHE 375
D	THR 5	GLU 72
D	GLY 74	PHE 375

There are 80 helices in PDB entry 9BPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	194	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	205	217	Right-handed alpha
Helix 10	AB1	A	223	233	Right-handed alpha
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	257	262	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	289	295	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	337	347	Right-handed alpha
Helix 18	AB9	A	348	355	Right-handed 310
Helix 19	AC1	A	359	366	Right-handed alpha
Helix 20	AC2	A	368	373	Right-handed alpha
Helix 21	AC3	B	55	61	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	97	101	Right-handed 310
Helix 24	AC6	B	112	126	Right-handed alpha
Helix 25	AC7	B	137	145	Right-handed alpha
Helix 26	AC8	B	172	175	Right-handed 310
Helix 27	AC9	B	181	194	Right-handed alpha
Helix 28	AD1	B	195	197	Right-handed 310
Helix 29	AD2	B	205	217	Right-handed alpha
Helix 30	AD3	B	223	233	Right-handed alpha
Helix 31	AD4	B	251	255	Right-handed 310
Helix 32	AD5	B	257	262	Right-handed 310
Helix 33	AD6	B	273	284	Right-handed alpha
Helix 34	AD7	B	289	295	Right-handed alpha
Helix 35	AD8	B	301	305	Right-handed 310
Helix 36	AD9	B	308	321	Right-handed alpha
Helix 37	AE1	B	337	347	Right-handed alpha
Helix 38	AE2	B	348	355	Right-handed 310
Helix 39	AE3	B	359	366	Right-handed alpha
Helix 40	AE4	B	368	373	Right-handed alpha
Helix 41	AE5	C	55	61	Right-handed alpha
Helix 42	AE6	C	78	92	Right-handed alpha
Helix 43	AE7	C	97	101	Right-handed 310
Helix 44	AE8	C	112	126	Right-handed alpha
Helix 45	AE9	C	137	145	Right-handed alpha
Helix 46	AF1	C	172	175	Right-handed 310
Helix 47	AF2	C	181	194	Right-handed alpha
Helix 48	AF3	C	195	197	Right-handed 310
Helix 49	AF4	C	205	217	Right-handed alpha
Helix 50	AF5	C	223	233	Right-handed alpha
Helix 51	AF6	C	251	255	Right-handed 310
Helix 52	AF7	C	257	262	Right-handed 310
Helix 53	AF8	C	273	284	Right-handed alpha
Helix 54	AF9	C	289	295	Right-handed alpha
Helix 55	AG1	C	301	305	Right-handed 310
Helix 56	AG2	C	308	321	Right-handed alpha
Helix 57	AG3	C	337	347	Right-handed alpha
Helix 58	AG4	C	348	355	Right-handed 310
Helix 59	AG5	C	359	366	Right-handed alpha
Helix 60	AG6	C	368	373	Right-handed alpha
Helix 61	AG7	D	55	61	Right-handed alpha
Helix 62	AG8	D	78	92	Right-handed alpha
Helix 63	AG9	D	97	101	Right-handed 310
Helix 64	AH1	D	112	126	Right-handed alpha
Helix 65	AH2	D	137	145	Right-handed alpha
Helix 66	AH3	D	172	175	Right-handed 310
Helix 67	AH4	D	181	194	Right-handed alpha
Helix 68	AH5	D	195	197	Right-handed 310
Helix 69	AH6	D	205	217	Right-handed alpha
Helix 70	AH7	D	223	233	Right-handed alpha
Helix 71	AH8	D	251	255	Right-handed 310
Helix 72	AH9	D	257	262	Right-handed 310
Helix 73	AI1	D	273	284	Right-handed alpha
Helix 74	AI2	D	289	295	Right-handed alpha
Helix 75	AI3	D	301	305	Right-handed 310
Helix 76	AI4	D	308	321	Right-handed alpha
Helix 77	AI5	D	337	347	Right-handed alpha
Helix 78	AI6	D	348	355	Right-handed 310
Helix 79	AI7	D	359	366	Right-handed alpha
Helix 80	AI8	D	368	373	Right-handed alpha

There are 24 sheets in PDB entry 9BPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	245	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	245	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	245	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	245	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPM